BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00038401
         (294 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABW81060.1| GagPol3 [Arabidopsis lyrata subsp. lyrata]             102   3e-20
gb|AAD22505.1| putative retroelement gag/pol polyprotein [Arabid...   100   1e-19
emb|CAN69143.1| hypothetical protein VITISV_027770 [Vitis vinifera]   100   1e-19
gb|AAF79618.1|AC027665_19 F5M15.26 [Arabidopsis thaliana]              98   6e-19
emb|CAN84035.1| hypothetical protein VITISV_016995 [Vitis vinifera]    98   6e-19

>gb|ABW81060.1| GagPol3 [Arabidopsis lyrata subsp. lyrata]
          Length = 1103

 Score =  102 bits (254), Expect = 3e-20
 Identities = 51/95 (53%), Positives = 68/95 (71%)
 Frame = +3

Query: 6   EACEKAFQELKVYLGRAPILSRPGQGEKLYLYLGVSEYAISSVLIRVVDKIERPVYFQSK 185
           E CE+AF +LK YL   PILS+P   EKLYLY+ VS +A+S VL+R     ++P+Y+ SK
Sbjct: 290 EKCEEAFGQLKAYLTTPPILSKPEVDEKLYLYVSVSNHAVSGVLVREDRGEQKPIYYVSK 349

Query: 186 TMLDAETRYSRIEKFALALVFSALKLKLYFDAHSV 290
           +M D ETRY+ +EK ALA+V SA KL+ YF +H V
Sbjct: 350 SMTDPETRYTMMEKLALAVVTSARKLRPYFQSHPV 384


>gb|AAD22505.1| putative retroelement gag/pol polyprotein [Arabidopsis thaliana]
          Length = 1212

 Score =  100 bits (250), Expect = 1e-19
 Identities = 49/96 (51%), Positives = 69/96 (71%)
 Frame = +3

Query: 6   EACEKAFQELKVYLGRAPILSRPGQGEKLYLYLGVSEYAISSVLIRVVDKIERPVYFQSK 185
           E CE+AF++LK YL    +L++P  GE+L+LY+ VSE AIS VL+RV    ERP+++ SK
Sbjct: 590 ERCEEAFRQLKSYLSEPLVLAKPEFGERLFLYISVSENAISGVLVRVERSDERPIFYVSK 649

Query: 186 TMLDAETRYSRIEKFALALVFSALKLKLYFDAHSVV 293
           +  D ETRY  +EK ALA+V +A KL+ YF +H +V
Sbjct: 650 SFSDVETRYPMMEKLALAVVTAARKLRPYFQSHPIV 685


>emb|CAN69143.1| hypothetical protein VITISV_027770 [Vitis vinifera]
          Length = 622

 Score =  100 bits (249), Expect = 1e-19
 Identities = 51/94 (54%), Positives = 69/94 (73%), Gaps = 1/94 (1%)
 Frame = +3

Query: 12  CEKAFQELKVYLGRAPILSRPGQGEKLYLYLGVSEYAISSVLIRVVD-KIERPVYFQSKT 188
           C+ AF+E+K YL + PILS P  GE+LYLYL V ++A+S VL+R +  + +RPVYF SK 
Sbjct: 144 CQNAFEEIKRYLSQPPILSSPQPGERLYLYLAVIDWAVSVVLLRSLSPREQRPVYFISKA 203

Query: 189 MLDAETRYSRIEKFALALVFSALKLKLYFDAHSV 290
           + D ETRYSR+E+ ALAL  +A KL+ YF AH +
Sbjct: 204 LADTETRYSRMEQTALALRTAAQKLRPYFQAHPI 237


>gb|AAF79618.1|AC027665_19 F5M15.26 [Arabidopsis thaliana]
          Length = 1838

 Score = 98.2 bits (243), Expect = 6e-19
 Identities = 48/92 (52%), Positives = 70/92 (76%)
 Frame = +3

Query: 15   EKAFQELKVYLGRAPILSRPGQGEKLYLYLGVSEYAISSVLIRVVDKIERPVYFQSKTML 194
            E+AF++LK YL   PIL +P  GE LYLY+ VS++A+SSVL+R     +RP+++ SK+++
Sbjct: 1096 EEAFEKLKDYLSTPPILVKPEVGETLYLYIAVSDHAVSSVLVREDRGEQRPIFYTSKSLV 1155

Query: 195  DAETRYSRIEKFALALVFSALKLKLYFDAHSV 290
            +AETRY  IEK ALA+V SA KL+ YF +H++
Sbjct: 1156 EAETRYPVIEKAALAVVTSARKLRPYFQSHTI 1187


>emb|CAN84035.1| hypothetical protein VITISV_016995 [Vitis vinifera]
          Length = 965

 Score = 98.2 bits (243), Expect = 6e-19
 Identities = 51/98 (52%), Positives = 71/98 (72%), Gaps = 1/98 (1%)
 Frame = +3

Query: 3   TEACEKAFQELKVYLGRAPILSRPGQGEKLYLYLGVSEYAISSVLIRVVD-KIERPVYFQ 179
           T++C+ AF+++K YL + PILS P   EKLY+YL VSE+AIS+VL R    K ++PVY+ 
Sbjct: 289 TDSCQNAFEKIKHYLMQPPILSSPIPKEKLYMYLAVSEWAISAVLFRYPSPKEQKPVYYV 348

Query: 180 SKTMLDAETRYSRIEKFALALVFSALKLKLYFDAHSVV 293
           S+ + D ETRYS++E  ALAL  +A KL+ YF AH V+
Sbjct: 349 SRALADVETRYSKMELTALALRSAAQKLRPYFQAHPVI 386