BLASTX nr result

ID: Coptis23_contig00038399 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00038399
         (557 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002269960.2| PREDICTED: BTB/POZ domain-containing protein...   192   4e-47
ref|XP_002323684.1| predicted protein [Populus trichocarpa] gi|2...   182   4e-44
ref|XP_003623642.1| BTB/POZ domain-containing protein [Medicago ...   175   5e-42
ref|XP_002884684.1| hypothetical protein ARALYDRAFT_478155 [Arab...   170   2e-40
ref|XP_002531804.1| Root phototropism protein, putative [Ricinus...   160   2e-37

>ref|XP_002269960.2| PREDICTED: BTB/POZ domain-containing protein At3g08570-like isoform
           1 [Vitis vinifera]
          Length = 636

 Score =  192 bits (487), Expect = 4e-47
 Identities = 104/142 (73%), Positives = 111/142 (78%), Gaps = 4/142 (2%)
 Frame = +3

Query: 3   KLIDCQKLSQEACNHVAQNDRLPVQMAVRVLYLEQVRLKRLFSGSCGDGFQSQRICSGVP 182
           K IDC+KLSQEACNH AQNDRLPVQM VRVLY EQ+RLK   SGS GDGF SQRI SGVP
Sbjct: 478 KFIDCKKLSQEACNHAAQNDRLPVQMTVRVLYFEQLRLKSSLSGSSGDGFLSQRISSGVP 537

Query: 183 SGAVSPRDNYASLRRENRDLKLEISRMRVRLSELEKEQVCIKQGMREKS----TFLTSLS 350
           S A+SPRDNYASLRRENR+LKLEISRMRVRLSELEKEQ+ +KQGM EKS    TFLTS+S
Sbjct: 538 SAAMSPRDNYASLRRENRELKLEISRMRVRLSELEKEQLFMKQGMIEKSGNGKTFLTSIS 597

Query: 351 XXXXXXXXFGSPATIVGKQGRK 416
                   F SPA    K GRK
Sbjct: 598 KGIGRIGIFSSPAGGKRKSGRK 619


>ref|XP_002323684.1| predicted protein [Populus trichocarpa] gi|222868314|gb|EEF05445.1|
           predicted protein [Populus trichocarpa]
          Length = 550

 Score =  182 bits (461), Expect = 4e-44
 Identities = 95/120 (79%), Positives = 103/120 (85%), Gaps = 4/120 (3%)
 Frame = +3

Query: 3   KLIDCQKLSQEACNHVAQNDRLPVQMAVRVLYLEQVRLKRLFSGSCGDGFQSQRICSGVP 182
           KLIDCQKLSQEACNH AQNDRLPVQM V+VLY EQ+RLK   SGS GDGF SQRI SG+P
Sbjct: 422 KLIDCQKLSQEACNHAAQNDRLPVQMTVQVLYSEQLRLKNALSGSSGDGFLSQRISSGIP 481

Query: 183 SGAVSPRDNYASLRRENRDLKLEISRMRVRLSELEKEQVCIKQGMREKS----TFLTSLS 350
           S A+SPRDNYASLRRENR+LKLEISRMRVRLSELEKEQ+ +KQGM +KS    TF TSLS
Sbjct: 482 SAAMSPRDNYASLRRENRELKLEISRMRVRLSELEKEQMYMKQGMIDKSGNGKTFFTSLS 541


>ref|XP_003623642.1| BTB/POZ domain-containing protein [Medicago truncatula]
           gi|355498657|gb|AES79860.1| BTB/POZ domain-containing
           protein [Medicago truncatula]
          Length = 704

 Score =  175 bits (443), Expect = 5e-42
 Identities = 92/131 (70%), Positives = 103/131 (78%), Gaps = 4/131 (3%)
 Frame = +3

Query: 3   KLIDCQKLSQEACNHVAQNDRLPVQMAVRVLYLEQVRLKRLFSGSCGDGFQSQRICSGVP 182
           K IDCQKLSQEACNH AQNDRLP+QM V+VLY EQ+RLK   SGS GDG  SQR+ SGVP
Sbjct: 516 KFIDCQKLSQEACNHAAQNDRLPLQMVVQVLYFEQLRLKNAVSGSSGDGLLSQRMSSGVP 575

Query: 183 SGAVSPRDNYASLRRENRDLKLEISRMRVRLSELEKEQVCIKQGMREKS----TFLTSLS 350
           S A+SPRDNYASLRRENR+LKLEISR+RVRLSELEKEQ+ +KQGM +K+    TF TSLS
Sbjct: 576 SAAMSPRDNYASLRRENRELKLEISRLRVRLSELEKEQMFMKQGMIDKAENGKTFFTSLS 635

Query: 351 XXXXXXXXFGS 383
                   F S
Sbjct: 636 KGIGRIANFSS 646


>ref|XP_002884684.1| hypothetical protein ARALYDRAFT_478155 [Arabidopsis lyrata subsp.
           lyrata] gi|297330524|gb|EFH60943.1| hypothetical protein
           ARALYDRAFT_478155 [Arabidopsis lyrata subsp. lyrata]
          Length = 554

 Score =  170 bits (430), Expect = 2e-40
 Identities = 93/136 (68%), Positives = 103/136 (75%), Gaps = 6/136 (4%)
 Frame = +3

Query: 3   KLIDCQKLSQEACNHVAQNDRLPVQMAVRVLYLEQVRLKRLFSGSCGDGF--QSQRICSG 176
           K ID QKLSQEACNHVAQNDRLPVQM VRVLY EQ+R+K + SG  GDG    SQ++ SG
Sbjct: 391 KFIDTQKLSQEACNHVAQNDRLPVQMVVRVLYSEQLRMKNVVSGESGDGLLLSSQKLSSG 450

Query: 177 VPSGAVSPRDNYASLRRENRDLKLEISRMRVRLSELEKEQVCIKQGMREKS----TFLTS 344
            PSGAVSPRD YASLRRENR+LKLEISR+RVRL+ELEKEQ+ +KQGM EKS    T LTS
Sbjct: 451 NPSGAVSPRDTYASLRRENRELKLEISRVRVRLTELEKEQILMKQGMMEKSGHGGTLLTS 510

Query: 345 LSXXXXXXXXFGSPAT 392
           LS        FG   T
Sbjct: 511 LSKGIGRISIFGGGPT 526


>ref|XP_002531804.1| Root phototropism protein, putative [Ricinus communis]
           gi|223528538|gb|EEF30561.1| Root phototropism protein,
           putative [Ricinus communis]
          Length = 592

 Score =  160 bits (404), Expect = 2e-37
 Identities = 94/160 (58%), Positives = 103/160 (64%), Gaps = 16/160 (10%)
 Frame = +3

Query: 3   KLIDCQKLSQEACNHVAQNDRLPVQMAVRVLYLEQVRLKRLFSGSCGDGFQSQRICSGVP 182
           K IDCQKLSQ+ACNH AQNDRLPVQM                SGS GDGF SQRI SGVP
Sbjct: 445 KFIDCQKLSQDACNHAAQNDRLPVQMT------------NALSGSSGDGFLSQRISSGVP 492

Query: 183 SGAVSPRDNYASLRRENRDLKLEISRMRVRLSELEKEQVCIKQGMREKS----TFLTSLS 350
           S A+SPRDNYASLRRENR+LKLEISRMRVRLSELEKEQ+ +KQGM +KS    TF TS+S
Sbjct: 493 SAAISPRDNYASLRRENRELKLEISRMRVRLSELEKEQMYMKQGMIDKSGNGKTFFTSIS 552

Query: 351 XXXXXXXXFGSPA------------TIVGKQGRKPQQAVS 434
                   F SPA               GK GR  + +VS
Sbjct: 553 KGIGRIGIFSSPAGGRRQKSGRKSRGTEGKNGRSRRHSVS 592


Top