BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00038368
         (352 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

dbj|BAD95408.1| hypothetical protein [Arabidopsis thaliana]            95   5e-18
ref|XP_002522932.1| conserved hypothetical protein [Ricinus comm...    93   2e-17
gb|ABN09154.1| RNA-directed DNA polymerase (Reverse transcriptas...    92   4e-17
gb|ABD28670.2| RNA-directed DNA polymerase (Reverse transcriptas...    91   1e-16
gb|ABD32264.2| RNA-directed DNA polymerase , putative [Medicago ...    89   4e-16

>dbj|BAD95408.1| hypothetical protein [Arabidopsis thaliana]
          Length = 478

 Score = 95.1 bits (235), Expect = 5e-18
 Identities = 43/107 (40%), Positives = 63/107 (58%)
 Frame = +2

Query: 8   WAGRHLSFQGRXXXXXXXXXXXXXYNMSIYRWPASLIKEAETLLINFLWTGDPCKTKAIT 187
           W  RHLSF GR             + MS +R P++ IKE +++  +FLW+G    TK   
Sbjct: 56  WTARHLSFAGRLQLISSVIHSLTNFWMSAFRLPSACIKEIDSICSSFLWSGPELNTKKAK 115

Query: 188 VSWDKVCKPTDEGGLGVKRLKEINKSMNMKLAWQVLNGTDAFAEFMR 328
           V+W  VC P DEGGLG++ LKE NK   +KL W++L+ T  + +++R
Sbjct: 116 VAWSDVCTPKDEGGLGIRSLKEANKVSLLKLIWRMLSSTSLWVQWLR 162


>ref|XP_002522932.1| conserved hypothetical protein [Ricinus communis]
           gi|223537826|gb|EEF39443.1| conserved hypothetical
           protein [Ricinus communis]
          Length = 303

 Score = 93.2 bits (230), Expect = 2e-17
 Identities = 41/116 (35%), Positives = 62/116 (53%)
 Frame = +2

Query: 5   SWAGRHLSFQGRXXXXXXXXXXXXXYNMSIYRWPASLIKEAETLLINFLWTGDPCKTKAI 184
           +W GR L   GR             +   +YRWP+SL+K  E  + NFLWTG     K +
Sbjct: 165 NWKGRTLFMAGRLALINSVIFASLLHTFMMYRWPSSLLKSIEKAIRNFLWTGSVSYKKLV 224

Query: 185 TVSWDKVCKPTDEGGLGVKRLKEINKSMNMKLAWQVLNGTDAFAEFMRAKHFTKAG 352
           TV W   CKP  EGG+G+KRL  +N++M  ++AW+  +       F+R+++   +G
Sbjct: 225 TVKWGHCCKPISEGGIGLKRLDVLNRTMLCRIAWKFYSNDSFVYRFLRSRYLVASG 280


>gb|ABN09154.1| RNA-directed DNA polymerase (Reverse transcriptase) [Medicago
           truncatula]
          Length = 528

 Score = 92.0 bits (227), Expect = 4e-17
 Identities = 39/98 (39%), Positives = 59/98 (60%)
 Frame = +2

Query: 5   SWAGRHLSFQGRXXXXXXXXXXXXXYNMSIYRWPASLIKEAETLLINFLWTGDPCKTKAI 184
           +W    LS  GR             + ++IY WP+ L+KE ET   NF+W+GD  K K +
Sbjct: 430 NWKASILSIAGRVQLIKSVAQSMLIHTITIYDWPSFLLKELETCFRNFIWSGDITKRKLV 489

Query: 185 TVSWDKVCKPTDEGGLGVKRLKEINKSMNMKLAWQVLN 298
           TV+W K+CKP  +GGLG++ L ++N + N+KL W +L+
Sbjct: 490 TVAWKKLCKPQSQGGLGIRSLSQLNAAGNLKLCWDMLH 527


>gb|ABD28670.2| RNA-directed DNA polymerase (Reverse transcriptase) [Medicago
           truncatula]
          Length = 642

 Score = 90.9 bits (224), Expect = 1e-16
 Identities = 40/107 (37%), Positives = 60/107 (56%)
 Frame = +2

Query: 8   WAGRHLSFQGRXXXXXXXXXXXXXYNMSIYRWPASLIKEAETLLINFLWTGDPCKTKAIT 187
           W    LS  GR             + MSIY WP  ++KE E  + NF+W+GD  K K +T
Sbjct: 525 WKASLLSIAGRIQLVKSVVQSMLVHTMSIYSWPIKILKEMEKWIKNFIWSGDVTKRKMVT 584

Query: 188 VSWDKVCKPTDEGGLGVKRLKEINKSMNMKLAWQVLNGTDAFAEFMR 328
           V+W K+C   +EGGLGVK L  +N++ N+K+ W ++   + +A  +R
Sbjct: 585 VAWRKICADYEEGGLGVKSLICLNEATNLKICWNLMQSDEQWANIIR 631


>gb|ABD32264.2| RNA-directed DNA polymerase , putative [Medicago truncatula]
          Length = 161

 Score = 89.0 bits (219), Expect = 4e-16
 Identities = 35/96 (36%), Positives = 58/96 (60%)
 Frame = +2

Query: 5   SWAGRHLSFQGRXXXXXXXXXXXXXYNMSIYRWPASLIKEAETLLINFLWTGDPCKTKAI 184
           +W    LS  GR             +++++Y WP SL+K+ E  + NF+W+GD  K K +
Sbjct: 65  TWKASLLSIAGRVQMVKSVIQSMLTHSITVYNWPTSLLKDLEKSIKNFIWSGDTSKRKLV 124

Query: 185 TVSWDKVCKPTDEGGLGVKRLKEINKSMNMKLAWQV 292
           TV+W K+C+P D+GGL ++ L ++N + N+KL W +
Sbjct: 125 TVAWKKLCRPFDQGGLRIRSLIQLNSASNLKLCWNI 160