BLASTX nr result
ID: Coptis23_contig00038321
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis23_contig00038321
(301 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_003619770.1| Pentatricopeptide repeat-containing protein ... 83 3e-14
ref|XP_003548969.1| PREDICTED: LOW QUALITY PROTEIN: pentatricope... 82 5e-14
ref|XP_003591696.1| Pentatricopeptide repeat-containing protein ... 82 5e-14
ref|NP_176495.1| pentatricopeptide repeat-containing protein [Ar... 82 6e-14
gb|ABE65736.1| pentatricopeptide repeat-containing protein [Arab... 82 6e-14
>ref|XP_003619770.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355494785|gb|AES75988.1| Pentatricopeptide
repeat-containing protein [Medicago truncatula]
Length = 582
Score = 82.8 bits (203), Expect = 3e-14
Identities = 39/100 (39%), Positives = 58/100 (58%)
Frame = -2
Query: 300 GKLLKHGLHPNVVTITTXXXXXXXXXXXLEAVELLEKFVFNGYTVDHVTYGVVINGLCKC 121
GK+LK G PN +T T +A+ +K V G+ +D V+YG +INGLCK
Sbjct: 129 GKILKKGFDPNAITFNTLIKGLCLKGHIHQALNFHDKVVAQGFHLDQVSYGTLINGLCKV 188
Query: 120 MNVDAALRLLRAMEMKKIVANVELYSMIVDGLCKQNRVND 1
+ AAL+LL+ ++ K + N +Y+MI+D +CK VND
Sbjct: 189 GRITAALQLLKRVDGKLVQPNAVMYNMIIDNMCKAKLVND 228
>ref|XP_003548969.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At1g12300, mitochondrial-like [Glycine max]
Length = 422
Score = 82.0 bits (201), Expect = 5e-14
Identities = 37/100 (37%), Positives = 60/100 (60%)
Frame = -2
Query: 300 GKLLKHGLHPNVVTITTXXXXXXXXXXXLEAVELLEKFVFNGYTVDHVTYGVVINGLCKC 121
GK+LK G PN +T+TT +++ +K V G+ ++HV+ G ++NGLCK
Sbjct: 113 GKILKLGYQPNTLTLTTLIKGLCLKDEVRKSLHFHDKLVAQGFQINHVSCGTLLNGLCKI 172
Query: 120 MNVDAALRLLRAMEMKKIVANVELYSMIVDGLCKQNRVND 1
+ A++LLR +E + + NV +Y+ I+DGLCK VN+
Sbjct: 173 GEMRGAMKLLRVIEDRSTITNVVMYNTIIDGLCKDKLVNE 212
>ref|XP_003591696.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355480744|gb|AES61947.1| Pentatricopeptide
repeat-containing protein [Medicago truncatula]
Length = 543
Score = 82.0 bits (201), Expect = 5e-14
Identities = 41/99 (41%), Positives = 58/99 (58%)
Frame = -2
Query: 297 KLLKHGLHPNVVTITTXXXXXXXXXXXLEAVELLEKFVFNGYTVDHVTYGVVINGLCKCM 118
K+LK G HPN +T+TT EA+ + + G+ + V+YG +INGLCK
Sbjct: 131 KILKMGYHPNTITLTTLVKGFCLNHKVKEALHFHDHVLALGFHFNQVSYGTLINGLCKIG 190
Query: 117 NVDAALRLLRAMEMKKIVANVELYSMIVDGLCKQNRVND 1
AAL++LR +E K + +V +YS I+DGLCK VND
Sbjct: 191 ETRAALQMLRQIEGKLVSTDVVMYSTIIDGLCKDKLVND 229
Score = 55.1 bits (131), Expect = 6e-06
Identities = 28/91 (30%), Positives = 51/91 (56%)
Frame = -2
Query: 273 PNVVTITTXXXXXXXXXXXLEAVELLEKFVFNGYTVDHVTYGVVINGLCKCMNVDAALRL 94
P+ VT + A EL+++ +G D +TY +I+ LCK +VD A+ L
Sbjct: 369 PDTVTYNSLIDGLCKSGRISYAWELVDEMRDSGQPADIITYNSLIDALCKNHHVDKAIAL 428
Query: 93 LRAMEMKKIVANVELYSMIVDGLCKQNRVND 1
++ ++ + I ++ Y++++DGLCKQ R+ D
Sbjct: 429 VKKIKDQGIQLDMYTYNILIDGLCKQGRLKD 459
>ref|NP_176495.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75169919|sp|Q9CAN6.1|PPR97_ARATH RecName:
Full=Pentatricopeptide repeat-containing protein
At1g63070, mitochondrial; Flags: Precursor
gi|12323265|gb|AAG51617.1|AC010795_21 unknown protein;
38394-36551 [Arabidopsis thaliana]
gi|332195929|gb|AEE34050.1| pentatricopeptide
repeat-containing protein [Arabidopsis thaliana]
Length = 590
Score = 81.6 bits (200), Expect = 6e-14
Identities = 44/99 (44%), Positives = 57/99 (57%)
Frame = -2
Query: 297 KLLKHGLHPNVVTITTXXXXXXXXXXXLEAVELLEKFVFNGYTVDHVTYGVVINGLCKCM 118
++++ G P+ VT TT EAV L+E+ V G D VTYG VINGLCK
Sbjct: 170 QMVEMGYQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVTYGAVINGLCKRG 229
Query: 117 NVDAALRLLRAMEMKKIVANVELYSMIVDGLCKQNRVND 1
D AL LL ME KI A+V +Y+ I+DGLCK ++D
Sbjct: 230 EPDLALNLLNKMEKGKIEADVVIYNTIIDGLCKYKHMDD 268
Score = 54.7 bits (130), Expect = 8e-06
Identities = 28/95 (29%), Positives = 51/95 (53%)
Frame = -2
Query: 300 GKLLKHGLHPNVVTITTXXXXXXXXXXXLEAVELLEKFVFNGYTVDHVTYGVVINGLCKC 121
GK++K G P++VT+ + EAV L+++ V GY D VT+ +++GL +
Sbjct: 134 GKMMKLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQMVEMGYQPDTVTFTTLVHGLFQH 193
Query: 120 MNVDAALRLLRAMEMKKIVANVELYSMIVDGLCKQ 16
A+ L+ M +K ++ Y +++GLCK+
Sbjct: 194 NKASEAVALVERMVVKGCQPDLVTYGAVINGLCKR 228
>gb|ABE65736.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 360
Score = 81.6 bits (200), Expect = 6e-14
Identities = 44/99 (44%), Positives = 57/99 (57%)
Frame = -2
Query: 297 KLLKHGLHPNVVTITTXXXXXXXXXXXLEAVELLEKFVFNGYTVDHVTYGVVINGLCKCM 118
++++ G P+ VT TT EAV L+E+ V G D VTYG VINGLCK
Sbjct: 170 QMVEMGYQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVTYGAVINGLCKRG 229
Query: 117 NVDAALRLLRAMEMKKIVANVELYSMIVDGLCKQNRVND 1
D AL LL ME KI A+V +Y+ I+DGLCK ++D
Sbjct: 230 EPDLALNLLNKMEKGKIEADVVIYNTIIDGLCKYKHMDD 268
Score = 54.7 bits (130), Expect = 8e-06
Identities = 28/95 (29%), Positives = 51/95 (53%)
Frame = -2
Query: 300 GKLLKHGLHPNVVTITTXXXXXXXXXXXLEAVELLEKFVFNGYTVDHVTYGVVINGLCKC 121
GK++K G P++VT+ + EAV L+++ V GY D VT+ +++GL +
Sbjct: 134 GKMMKLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQMVEMGYQPDTVTFTTLVHGLFQH 193
Query: 120 MNVDAALRLLRAMEMKKIVANVELYSMIVDGLCKQ 16
A+ L+ M +K ++ Y +++GLCK+
Sbjct: 194 NKASEAVALVERMVVKGCQPDLVTYGAVINGLCKR 228