BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00038320
         (862 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABE87589.2| RNA-directed DNA polymerase (Reverse transcriptas...   173   1e-62
gb|ABN09154.1| RNA-directed DNA polymerase (Reverse transcriptas...   150   9e-53
gb|ABD28670.2| RNA-directed DNA polymerase (Reverse transcriptas...   144   8e-51
emb|CAE04660.2| OSJNBa0061G20.16 [Oryza sativa Japonica Group]        122   2e-44
gb|AAS55787.1| hypothetical protein [Oryza sativa Japonica Group...   119   6e-44

>gb|ABE87589.2| RNA-directed DNA polymerase (Reverse transcriptase); Ribonuclease H;
            Endonuclease/exonuclease/phosphatase [Medicago
            truncatula]
          Length = 1246

 Score =  173 bits (439), Expect(2) = 1e-62
 Identities = 81/181 (44%), Positives = 123/181 (67%)
 Frame = +1

Query: 289  IAMAFEMVNELKKDRFGGSVAVKLDITQAYDTMSWRFLFQVMRKMDFSEKWIKWIETIVS 468
            + +A E +N L+K ++GG+VA+K+DI +A+DT+ W FL  V+++  F EK++ WI  I+ 
Sbjct: 564  VILASEAINLLEKRQYGGNVALKVDIAKAFDTLDWNFLLAVLQRFGFDEKFVHWILVILQ 623

Query: 469  SAQISILLNGGPVGFFSMKRGLKQGDPLSPLLFALAEDTLSRAIHYLRDRNHLKPLTTIK 648
            SA++S+L+NG  VGFF+   G++QGDPLSPLLF L E+ LSRA+        L P++  +
Sbjct: 624  SARLSVLVNGKAVGFFTCSHGVRQGDPLSPLLFCLVEEVLSRALSMAATDGQLIPMSYCR 683

Query: 649  GVATPSHLMFADDIIIFANGEIRGIRKLNHILQRYQNAAGQLISQAKSKIFFCNFTHLRK 828
            GV+ P+H+++ADD++IF  G  R IR+L  I  +Y   +GQLI+ AKS+ F    T  R 
Sbjct: 684  GVSFPTHILYADDVLIFCTGTKRNIRRLIKIFSQYSEVSGQLINNAKSRFFTSAMTGSRV 743

Query: 829  Q 831
            Q
Sbjct: 744  Q 744



 Score = 93.6 bits (231), Expect(2) = 1e-62
 Identities = 47/95 (49%), Positives = 62/95 (65%)
 Frame = +3

Query: 3   GFQGHFYFSCWGIIKQDVCMAIQSFFIQGCLPRGLNSNFIALIPKDNNAKKVIQYRPICM 182
           GF GHFY + W I+  DV  ++Q FFI G L + +NSN I LIPK   A+ +  YRPI +
Sbjct: 464 GFGGHFYQTYWDIVGADVIQSVQDFFISGQLAQNINSNLIVLIPKVPGARVMGDYRPIAL 523

Query: 183 GNFLFKIITKLLQIRLNNLADDIITKEQTGFIPDK 287
            NF FKII+K+L  RL ++   II+ EQ GFI D+
Sbjct: 524 ANFQFKIISKILADRLADITMRIISVEQRGFIRDR 558


>gb|ABN09154.1| RNA-directed DNA polymerase (Reverse transcriptase) [Medicago
           truncatula]
          Length = 528

 Score =  150 bits (378), Expect(2) = 9e-53
 Identities = 72/160 (45%), Positives = 109/160 (68%)
 Frame = +1

Query: 289 IAMAFEMVNELKKDRFGGSVAVKLDITQAYDTMSWRFLFQVMRKMDFSEKWIKWIETIVS 468
           + +A E +N L +  FGG++A K+DI++A+DT++W+FL +V+++  FSE +  WI+ I+ 
Sbjct: 238 VCLASEAINMLDQKSFGGNLAFKVDISKAFDTLNWKFLLKVLKQFGFSETFCNWIDAILQ 297

Query: 469 SAQISILLNGGPVGFFSMKRGLKQGDPLSPLLFALAEDTLSRAIHYLRDRNHLKPLTTIK 648
           SA++SI +NG   G+FS  RG++QGDPLSPLLF LAED LSR++  L ++  LK +   +
Sbjct: 298 SAKLSICINGSQQGYFSCSRGVRQGDPLSPLLFCLAEDVLSRSLTKLVEQGKLKQMRGTR 357

Query: 649 GVATPSHLMFADDIIIFANGEIRGIRKLNHILQRYQNAAG 768
               PSH+++ADDI+IF NG I   R     LQ+  N  G
Sbjct: 358 NCLVPSHILYADDIMIFCNGGISDAR-----LQQLINVIG 392



 Score = 84.0 bits (206), Expect(2) = 9e-53
 Identities = 42/96 (43%), Positives = 59/96 (61%)
 Frame = +3

Query: 3   GFQGHFYFSCWGIIKQDVCMAIQSFFIQGCLPRGLNSNFIALIPKDNNAKKVIQYRPICM 182
           GF   FY   W I+K+DV  A+  FF  G +    N+N + LIPK  NA  + Q+RPI M
Sbjct: 138 GFGSCFYQIYWDIVKEDVIKAVLQFFNTGWILPNFNANTLILIPKTQNADSMDQFRPIAM 197

Query: 183 GNFLFKIITKLLQIRLNNLADDIITKEQTGFIPDKH 290
            NF FKII+K+L  RL  +  +I+++EQ GFI  ++
Sbjct: 198 ANFKFKIISKILADRLAQIMPNIVSQEQRGFIQGRN 233


>gb|ABD28670.2| RNA-directed DNA polymerase (Reverse transcriptase) [Medicago
           truncatula]
          Length = 642

 Score =  144 bits (364), Expect(2) = 8e-51
 Identities = 67/184 (36%), Positives = 113/184 (61%)
 Frame = +1

Query: 289 IAMAFEMVNELKKDRFGGSVAVKLDITQAYDTMSWRFLFQVMRKMDFSEKWIKWIETIVS 468
           IA+  E +N L    FGG++A+K+D+T+A+DT++W FL  V++   F+E +  WI+TI+ 
Sbjct: 299 IALTSEAINVLDNKSFGGNLALKIDVTKAFDTLNWDFLLLVLKTFGFNELFCNWIKTILH 358

Query: 469 SAQISILLNGGPVGFFSMKRGLKQGDPLSPLLFALAEDTLSRAIHYLRDRNHLKPLTTIK 648
           S+++ I +NG   GFF+  RG++QGDPLSPLLF + E+ LSR+I  L D+  +  +   +
Sbjct: 359 SSKMFISMNGAQHGFFNCNRGVRQGDPLSPLLFCIVEEVLSRSISILADKGLIDLIAASR 418

Query: 649 GVATPSHLMFADDIIIFANGEIRGIRKLNHILQRYQNAAGQLISQAKSKIFFCNFTHLRK 828
               P H  + DD+++F   ++  +  L  +  RY + +GQ+++  KS IF    T  R 
Sbjct: 419 NNCLPFHCFYVDDLMVFCKAKMSSLIVLKSLFTRYADCSGQIMNIRKSFIFAGGITDTRM 478

Query: 829 QGVL 840
             ++
Sbjct: 479 NNIV 482



 Score = 82.8 bits (203), Expect(2) = 8e-51
 Identities = 44/95 (46%), Positives = 56/95 (58%)
 Frame = +3

Query: 6   FQGHFYFSCWGIIKQDVCMAIQSFFIQGCLPRGLNSNFIALIPKDNNAKKVIQYRPICMG 185
           F   F+   W I+K+DV  A+  FF  G LP   N+N I LIPK  NA  V QYR I + 
Sbjct: 200 FGACFFQIYWNIVKKDVYEAVLDFFKNGWLPNNFNANSIILIPKTPNADSVDQYRTIALV 259

Query: 186 NFLFKIITKLLQIRLNNLADDIITKEQTGFIPDKH 290
           NF FKII K+L  RL  +   II+KEQ GF+  ++
Sbjct: 260 NFKFKIINKVLADRLAKILPSIISKEQRGFVQGRN 294


>emb|CAE04660.2| OSJNBa0061G20.16 [Oryza sativa Japonica Group]
          Length = 1285

 Score =  122 bits (305), Expect(2) = 2e-44
 Identities = 64/172 (37%), Positives = 96/172 (55%), Gaps = 2/172 (1%)
 Frame = +1

Query: 295  MAFEMVNELKKDRFGGSVAV--KLDITQAYDTMSWRFLFQVMRKMDFSEKWIKWIETIVS 468
            +AFE  + ++K++   S A   KLD+++AYD + WRFL   + K+ F+ +W+ WI + V+
Sbjct: 1104 LAFECFHSIQKNKKANSAACAYKLDLSKAYDRVDWRFLELALNKLGFAHRWVSWIMSCVT 1163

Query: 469  SAQISILLNGGPVGFFSMKRGLKQGDPLSPLLFALAEDTLSRAIHYLRDRNHLKPLTTIK 648
            + + S+  NG  +  F+  RGL+QGDPLSP LF    D LS  +     +N L PL    
Sbjct: 1164 TVRYSVKFNGTLLRSFAPTRGLRQGDPLSPFLFLFVADGLSLLLKEKVAQNSLTPLKICC 1223

Query: 649  GVATPSHLMFADDIIIFANGEIRGIRKLNHILQRYQNAAGQLISQAKSKIFF 804
                 SHL+FADD ++F   E +    +  +L  Y    GQLI+ AK  I F
Sbjct: 1224 QAPGISHLLFADDTLLFFKAEKKEAEVVKEVLTNYAQGTGQLINPAKCSILF 1275



 Score = 84.3 bits (207), Expect(2) = 2e-44
 Identities = 37/92 (40%), Positives = 58/92 (63%)
 Frame = +3

Query: 3    GFQGHFYFSCWGIIKQDVCMAIQSFFIQGCLPRGLNSNFIALIPKDNNAKKVIQYRPICM 182
            GF   FY   WG +K D+ +A+++FF  G +P G+N   I LIPK +    +  YRPI +
Sbjct: 1002 GFPARFYQRNWGTLKSDIILAVRNFFQSGLMPEGVNDTAIVLIPKKDQPIDLKDYRPISL 1061

Query: 183  GNFLFKIITKLLQIRLNNLADDIITKEQTGFI 278
             N ++K+++K L  RL  + DD+++KEQ+ FI
Sbjct: 1062 CNVVYKVVSKCLVNRLRPILDDLVSKEQSAFI 1093


>gb|AAS55787.1| hypothetical protein [Oryza sativa Japonica Group]
            gi|54291856|gb|AAV32224.1| hypothetical protein [Oryza
            sativa Japonica Group]
          Length = 1936

 Score =  119 bits (298), Expect(2) = 6e-44
 Identities = 62/172 (36%), Positives = 96/172 (55%), Gaps = 2/172 (1%)
 Frame = +1

Query: 295  MAFEMVNELKKDRFGGSVAV--KLDITQAYDTMSWRFLFQVMRKMDFSEKWIKWIETIVS 468
            +AFE  + ++K++   S A   KLD+++AYD + WRFL   + K+ F+ +W+ WI   V+
Sbjct: 1192 LAFECFHSIQKNKKANSAACAYKLDLSKAYDRVDWRFLELALNKLGFAHRWVSWIMLCVT 1251

Query: 469  SAQISILLNGGPVGFFSMKRGLKQGDPLSPLLFALAEDTLSRAIHYLRDRNHLKPLTTIK 648
            + + S+  NG  +  F+  RGL+QG+PLSP LF    D LS  +     +N L PL   +
Sbjct: 1252 TVRYSVKFNGTLLRSFAPTRGLRQGEPLSPFLFLFVADGLSLLLKEKVAQNSLTPLKICR 1311

Query: 649  GVATPSHLMFADDIIIFANGEIRGIRKLNHILQRYQNAAGQLISQAKSKIFF 804
                 S+L+FADD ++F   E +    +  +L  Y    GQLI+ AK  I F
Sbjct: 1312 QAPGISYLLFADDTLLFFKAEKKEAEVVKEVLTNYAQGTGQLINPAKCSILF 1363



 Score = 85.1 bits (209), Expect(2) = 6e-44
 Identities = 37/92 (40%), Positives = 59/92 (64%)
 Frame = +3

Query: 3    GFQGHFYFSCWGIIKQDVCMAIQSFFIQGCLPRGLNSNFIALIPKDNNAKKVIQYRPICM 182
            GF   FY   WG +K D+ +A+++FF  G +P+G+N   I LIPK +    +  YRPI +
Sbjct: 1090 GFPARFYQRNWGTLKSDIILAVRNFFQSGLMPKGVNDTAIVLIPKKDQPIDLKDYRPISL 1149

Query: 183  GNFLFKIITKLLQIRLNNLADDIITKEQTGFI 278
             N ++K+++K L  RL  + DD+++KEQ+ FI
Sbjct: 1150 CNVVYKVVSKCLVNRLRPILDDLVSKEQSAFI 1181