BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00038283
         (308 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002279376.1| PREDICTED: pentatricopeptide repeat-containi...   102   4e-20
ref|XP_002299231.1| predicted protein [Populus trichocarpa] gi|2...    77   2e-12
ref|XP_004150015.1| PREDICTED: pentatricopeptide repeat-containi...    68   9e-10
emb|CBI36755.3| unnamed protein product [Vitis vinifera]               67   1e-09
ref|XP_002284834.1| PREDICTED: putative pentatricopeptide repeat...    67   1e-09

>ref|XP_002279376.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
           [Vitis vinifera]
          Length = 584

 Score =  102 bits (253), Expect = 4e-20
 Identities = 51/102 (50%), Positives = 68/102 (66%), Gaps = 4/102 (3%)
 Frame = +2

Query: 14  MPHFSTIPSLHRHLLTTLTNPHQQ----KTLSLLQSCKTIHQIKQLHAQLILTDQISNTF 181
           MPH     S  R + T  T    +    KTLS LQSCK+   +K++HAQLI+T QI +TF
Sbjct: 1   MPHIPLFSSFWRQITTVTTKFKSKNSNYKTLSALQSCKSTEDLKKIHAQLIITGQIKDTF 60

Query: 182 FATKLLEFYAITTKNIDYALGVFNQINEPNAYTWTSIIRGFV 307
            ATK +E YA++ +NIDYA  VF  IN P++Y+WT++IRGFV
Sbjct: 61  IATKTVESYAVSARNIDYAFWVFVGINYPDSYSWTTMIRGFV 102


>ref|XP_002299231.1| predicted protein [Populus trichocarpa] gi|222846489|gb|EEE84036.1|
           predicted protein [Populus trichocarpa]
          Length = 668

 Score = 76.6 bits (187), Expect = 2e-12
 Identities = 43/111 (38%), Positives = 68/111 (61%), Gaps = 12/111 (10%)
 Frame = +2

Query: 11  LMPHFSTIPSLHRHLLTT-LTNPHQQKT----------LSLLQSCKTIHQIKQLHAQLIL 157
           L P FS + SLH H  +T  +NP    T          LSLL++CK+  Q+KQ+ AQ+IL
Sbjct: 20  LNPFFSCL-SLHSHSFSTHKSNPTSWNTTHTYVLSNPLLSLLENCKSFSQLKQIQAQMIL 78

Query: 158 TDQISNTFFATKLLEFYAIT-TKNIDYALGVFNQINEPNAYTWTSIIRGFV 307
           T  I + F +++L+ F AI+ ++N+DY + + N +  PN ++W ++IRG V
Sbjct: 79  TGLILDGFASSRLISFCAISESRNLDYCIKILNNLQNPNVFSWNAVIRGCV 129


>ref|XP_004150015.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
           gi|449529868|ref|XP_004171920.1| PREDICTED:
           pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 734

 Score = 67.8 bits (164), Expect = 9e-10
 Identities = 37/98 (37%), Positives = 55/98 (56%), Gaps = 1/98 (1%)
 Frame = +2

Query: 11  LMPHFSTIPSLHRHLLTTLTNPHQQKTLSLLQSCKTIHQIKQLHAQLILTDQISNTFFAT 190
           L P F  +PS          +P    +L LL  C++I   KQ+HA +I T   +  F  +
Sbjct: 10  LSPSFHVLPSSDPPYRVLQEHP----SLKLLSKCQSIRTFKQIHAHIIKTGLHNTLFALS 65

Query: 191 KLLEFYAIT-TKNIDYALGVFNQINEPNAYTWTSIIRG 301
           KL+EF A++ + +I YA+ +FN I EPN + W S+IRG
Sbjct: 66  KLIEFSAVSRSGDISYAISLFNSIEEPNLFIWNSMIRG 103


>emb|CBI36755.3| unnamed protein product [Vitis vinifera]
          Length = 751

 Score = 67.4 bits (163), Expect = 1e-09
 Identities = 31/77 (40%), Positives = 51/77 (66%), Gaps = 1/77 (1%)
 Frame = +2

Query: 77  HQQKTLSLLQSCKTIHQIKQLHAQLILTDQISNTFFATKLLEFYAIT-TKNIDYALGVFN 253
           H    LSLL+ CKT+ ++K+LH  +I T  I +    ++L++F A + + N++YA  VFN
Sbjct: 4   HYNSILSLLEKCKTMAELKRLHGLMITTSVIQDVIPLSRLVDFCAYSDSGNLNYAKSVFN 63

Query: 254 QINEPNAYTWTSIIRGF 304
           QI+ P+ Y W S+I+G+
Sbjct: 64  QIDRPSLYIWNSMIKGY 80


>ref|XP_002284834.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g05240 [Vitis vinifera]
          Length = 565

 Score = 67.4 bits (163), Expect = 1e-09
 Identities = 31/77 (40%), Positives = 51/77 (66%), Gaps = 1/77 (1%)
 Frame = +2

Query: 77  HQQKTLSLLQSCKTIHQIKQLHAQLILTDQISNTFFATKLLEFYAIT-TKNIDYALGVFN 253
           H    LSLL+ CKT+ ++K+LH  +I T  I +    ++L++F A + + N++YA  VFN
Sbjct: 4   HYNSILSLLEKCKTMAELKRLHGLMITTSVIQDVIPLSRLVDFCAYSDSGNLNYAKSVFN 63

Query: 254 QINEPNAYTWTSIIRGF 304
           QI+ P+ Y W S+I+G+
Sbjct: 64  QIDRPSLYIWNSMIKGY 80