BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00038266
         (628 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003530680.1| PREDICTED: putative pentatricopeptide repeat...   235   4e-60
ref|XP_003631282.1| PREDICTED: putative pentatricopeptide repeat...   235   6e-60
ref|XP_002520145.1| pentatricopeptide repeat-containing protein,...   224   1e-56
ref|XP_004135465.1| PREDICTED: putative pentatricopeptide repeat...   219   3e-55
ref|XP_002870708.1| hypothetical protein ARALYDRAFT_493946 [Arab...   201   7e-50

>ref|XP_003530680.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g40405-like [Glycine max]
          Length = 616

 Score =  235 bits (600), Expect = 4e-60
 Identities = 120/210 (57%), Positives = 152/210 (72%), Gaps = 2/210 (0%)
 Frame = -3

Query: 626 IINGHYNDHYAHLINQFISTVALKHPNHLDYSNKVLHHFEYPTVFTLNSMIRAHSKSTTP 447
           ++ G  N+ + H   QF++T+AL +  +LDY+NK+L+H   PT+FTLNSMIRA+SKS+TP
Sbjct: 33  VVKGILNNPHFH--GQFVATIALHNTTNLDYANKLLNHNNNPTLFTLNSMIRAYSKSSTP 90

Query: 446 YQSFYHFHRILRTDN--LFVDNYTFTFLIRTCTHILSCSIGCGVHGACIKFGFESLHYVQ 273
            +SF+ +  IL ++N  L  DNYTFTFL+RTC  + +   G  VHGA IK GFE   +VQ
Sbjct: 91  SKSFHFYANILHSNNNNLSPDNYTFTFLVRTCAQLQAHVTGLCVHGAVIKHGFELDPHVQ 150

Query: 272 CALIHMYAELGFLGLARRVFLEVKGPDLVAQTTMLSACAKSGEVDFARSLFDRMPERDCV 93
             L+ MYAELG L     VF     PDLV QT ML+ACAK G++DFAR +FD MPERD V
Sbjct: 151 TGLVFMYAELGCLSSCHNVFDGAVEPDLVTQTAMLNACAKCGDIDFARKMFDEMPERDHV 210

Query: 92  TWSAMISGYAQCGRSREALSLFHCMQMEGV 3
           TW+AMI+GYAQCGRSREAL +FH MQMEGV
Sbjct: 211 TWNAMIAGYAQCGRSREALDVFHLMQMEGV 240



 Score = 58.9 bits (141), Expect = 7e-07
 Identities = 48/196 (24%), Positives = 80/196 (40%)
 Frame = -3

Query: 590 LINQFISTVALKHPNHLDYSNKVLHHFEYPTVFTLNSMIRAHSKSTTPYQSFYHFHRILR 411
           L+ Q     A      +D++ K+          T N+MI  +++     ++   FH +++
Sbjct: 178 LVTQTAMLNACAKCGDIDFARKMFDEMPERDHVTWNAMIAGYAQCGRSREALDVFH-LMQ 236

Query: 410 TDNLFVDNYTFTFLIRTCTHILSCSIGCGVHGACIKFGFESLHYVQCALIHMYAELGFLG 231
            + + ++  +   ++  CTH+     G  VH            YV+   + M   LG   
Sbjct: 237 MEGVKLNEVSMVLVLSACTHLQVLDHGRWVHA-----------YVERYKVRMTVTLG--- 282

Query: 230 LARRVFLEVKGPDLVAQTTMLSACAKSGEVDFARSLFDRMPERDCVTWSAMISGYAQCGR 51
                            T ++   AK G VD A  +F  M ER+  TWS+ I G A  G 
Sbjct: 283 -----------------TALVDMYAKCGNVDRAMQVFWGMKERNVYTWSSAIGGLAMNGF 325

Query: 50  SREALSLFHCMQMEGV 3
             E+L LF+ M+ EGV
Sbjct: 326 GEESLDLFNDMKREGV 341


>ref|XP_003631282.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g40405-like [Vitis vinifera]
          Length = 615

 Score =  235 bits (599), Expect = 6e-60
 Identities = 119/209 (56%), Positives = 153/209 (73%), Gaps = 1/209 (0%)
 Frame = -3

Query: 626 IINGHYNDHYAHLINQFISTVALKHPNHLDYSNKVLHHFEYPTVFTLNSMIRAHSKSTTP 447
           +ING  ND    L+ QF++++AL +PN+L YSN+VL + + PT+FT NSMIRAHSKS+TP
Sbjct: 33  LINGLLND--PQLVGQFVASIALNNPNNLHYSNQVLDNSQNPTLFTFNSMIRAHSKSSTP 90

Query: 446 YQSFYHFHRILRTDN-LFVDNYTFTFLIRTCTHILSCSIGCGVHGACIKFGFESLHYVQC 270
           ++SF+ + RIL +   L  DNYTFTFL+RT   +L+   G  VHGA +K+GFE   +VQ 
Sbjct: 91  HRSFHFYSRILHSAGYLAPDNYTFTFLVRTSAQLLAHGTGSSVHGAAVKYGFEYDPHVQS 150

Query: 269 ALIHMYAELGFLGLARRVFLEVKGPDLVAQTTMLSACAKSGEVDFARSLFDRMPERDCVT 90
            LI+MYAELG L    RVF  +  PDLV QT M+SACAK G+V FAR LFD+M  +D + 
Sbjct: 151 GLIYMYAELGGLDACHRVFSSICEPDLVCQTAMVSACAKMGDVGFARKLFDKMSHKDPIA 210

Query: 89  WSAMISGYAQCGRSREALSLFHCMQMEGV 3
           W+AMISGY QCG+SREALSLF+ MQ EGV
Sbjct: 211 WNAMISGYVQCGQSREALSLFNLMQREGV 239


>ref|XP_002520145.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223540637|gb|EEF42200.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 327

 Score =  224 bits (570), Expect = 1e-56
 Identities = 111/191 (58%), Positives = 139/191 (72%), Gaps = 1/191 (0%)
 Frame = -3

Query: 572 STVALKHPNHLDYSNKVLHHFEYPTVFTLNSMIRAHSKSTTPYQSFYHFHRILRTDN-LF 396
           +++ LK+P ++DYSN++L     PTVF LNSMIRAHSK + P +SFY F+RI+ + N + 
Sbjct: 22  ASIVLKNPKNVDYSNQILDQCNDPTVFALNSMIRAHSKGSKPQKSFYFFNRIIHSHNGIS 81

Query: 395 VDNYTFTFLIRTCTHILSCSIGCGVHGACIKFGFESLHYVQCALIHMYAELGFLGLARRV 216
            DNYTF FLIR C  +L+  IG  VHG  IK+GF    +VQ  LI MYAELG LG  R+V
Sbjct: 82  PDNYTFNFLIRACAQLLAKEIGLAVHGCVIKYGFGLDPHVQSGLIFMYAELGCLGFCRQV 141

Query: 215 FLEVKGPDLVAQTTMLSACAKSGEVDFARSLFDRMPERDCVTWSAMISGYAQCGRSREAL 36
           F  +  PDLV QT M+SAC+K G+V FAR LFD MP RD + WSAMI+GYAQCG+SREAL
Sbjct: 142 FDLIPQPDLVCQTAMVSACSKCGDVGFARELFDSMPHRDHIAWSAMIAGYAQCGQSREAL 201

Query: 35  SLFHCMQMEGV 3
           +LFH MQ+E V
Sbjct: 202 ALFHLMQLEDV 212


>ref|XP_004135465.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g40405-like [Cucumis sativus]
          Length = 614

 Score =  219 bits (558), Expect = 3e-55
 Identities = 112/209 (53%), Positives = 154/209 (73%), Gaps = 1/209 (0%)
 Frame = -3

Query: 626 IINGHYNDHYAHLINQFISTVALKHPNHLDYSNKVLHHFEYPTVFTLNSMIRAHSKSTTP 447
           +ING  N+    L+ QF++++A+++P +L YSN++L     PT+F LNSMIRA+SKS TP
Sbjct: 33  VINGLLNNR--ELLGQFVASIAVRNPTNLLYSNQILDQCAKPTLFALNSMIRAYSKSLTP 90

Query: 446 YQSFYHFHRILRTDNLFV-DNYTFTFLIRTCTHILSCSIGCGVHGACIKFGFESLHYVQC 270
           ++SF  +++IL+++++   DNYTF FL+RTC    +C  G  VHGA IK GFE   +V+ 
Sbjct: 91  HKSFQFYNKILQSNDVMSPDNYTFNFLVRTCAQS-ACEAGPAVHGALIKHGFEYDPHVES 149

Query: 269 ALIHMYAELGFLGLARRVFLEVKGPDLVAQTTMLSACAKSGEVDFARSLFDRMPERDCVT 90
            LI MYAE+  L    RVF  V+ PDLV QTTM+SACAK G++ FAR+LFD MP+RD V+
Sbjct: 150 GLIFMYAEMSCLSSCHRVFESVQKPDLVCQTTMVSACAKCGDIGFARNLFDSMPQRDFVS 209

Query: 89  WSAMISGYAQCGRSREALSLFHCMQMEGV 3
           W+AMI+GYAQ G+SREAL+LF  MQM+GV
Sbjct: 210 WNAMIAGYAQRGQSREALNLFKLMQMDGV 238


>ref|XP_002870708.1| hypothetical protein ARALYDRAFT_493946 [Arabidopsis lyrata subsp.
           lyrata] gi|297316544|gb|EFH46967.1| hypothetical protein
           ARALYDRAFT_493946 [Arabidopsis lyrata subsp. lyrata]
          Length = 1111

 Score =  201 bits (512), Expect = 7e-50
 Identities = 103/198 (52%), Positives = 134/198 (67%), Gaps = 1/198 (0%)
 Frame = -3

Query: 593 HLINQFISTVALKHPNHLDYSNKVLHHFEYPTVFTLNSMIRAHSKSTTPYQSFYHFHRIL 414
           HL+ QF+  VAL    +LDY+N++L   + PT+F LNSMIRAH KS  P +SF  + RIL
Sbjct: 47  HLVGQFVKAVALSDHTYLDYANQILDRSDKPTLFALNSMIRAHCKSPVPEKSFDFYSRIL 106

Query: 413 RTDN-LFVDNYTFTFLIRTCTHILSCSIGCGVHGACIKFGFESLHYVQCALIHMYAELGF 237
            + N L  DNYT  FL++ CT +     G  VHG  I+ GF++  +VQ  LI +YAELG 
Sbjct: 107 SSGNGLKPDNYTVNFLVQACTGLGMRETGLQVHGMTIRRGFDNDPHVQTGLISLYAELGC 166

Query: 236 LGLARRVFLEVKGPDLVAQTTMLSACAKSGEVDFARSLFDRMPERDCVTWSAMISGYAQC 57
           L    +VF  V  PD V +T M++ACA+ G+V FAR LF+ MPE+D + W+AMISGYAQ 
Sbjct: 167 LDSCHKVFNSVSYPDFVCRTAMVTACARCGDVAFARKLFEGMPEKDPIAWNAMISGYAQV 226

Query: 56  GRSREALSLFHCMQMEGV 3
           G SREAL+LFH MQ+EGV
Sbjct: 227 GESREALNLFHLMQLEGV 244



 Score = 63.2 bits (152), Expect = 4e-08
 Identities = 50/176 (28%), Positives = 81/176 (46%), Gaps = 4/176 (2%)
 Frame = -3

Query: 533  SNKVLHHFEYPTVFTLNSMIRAHSKSTTPYQSFYHFHRILRTDNLFVDNYTFTFLIRTCT 354
            S K+        + + N+MI  H ++    +   +F+ + R   L  D  TF  ++R C 
Sbjct: 691  SCKLFEDLSVKNLVSWNTMIVIHLQNGLAEEGLAYFN-MSRWVGLKPDQATFLAVLRVCE 749

Query: 353  HILSCSIGCGVHGACIKFGFESLHYVQCALIHMYAELGFLGLARRVFLEVKGPDLVAQTT 174
             I    +  G+HG  +  GF +   +  AL+ +YA+LG L  +  VFLE+  PD +A T 
Sbjct: 750  DIGVVRLSQGIHGLIMFCGFNANTCITTALLDLYAKLGRLEDSSTVFLEITSPDSMAWTA 809

Query: 173  MLSACAKSGEVDFARSLFDRMP----ERDCVTWSAMISGYAQCGRSREALSLFHCM 18
            ML+A A  G    A   F+ M       D VT++ +++  +  G   E    F  M
Sbjct: 810  MLAAYATHGYGRDAIKHFELMVHYGLSPDHVTFTHLLNACSHSGLVEEGRYYFETM 865