BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00038226
         (487 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002268530.1| PREDICTED: pentatricopeptide repeat-containi...   258   5e-67
emb|CAN68467.1| hypothetical protein VITISV_029899 [Vitis vinifera]   251   3e-65
emb|CBI29241.3| unnamed protein product [Vitis vinifera]              245   2e-63
ref|XP_004154482.1| PREDICTED: pentatricopeptide repeat-containi...   234   6e-60
ref|XP_004139718.1| PREDICTED: pentatricopeptide repeat-containi...   234   6e-60

>ref|XP_002268530.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Vitis vinifera]
          Length = 631

 Score =  258 bits (658), Expect = 5e-67
 Identities = 119/162 (73%), Positives = 146/162 (90%)
 Frame = +2

Query: 2   LAMHGRAKDALDYFSKMEKSGVKPSDVSYIGVLAACSHAGLVDLGKFYFDQMVRVVGLKP 181
           LAMHGRAKD LD+F  ME++GV PSDV+YIG+L+ACSHAGLV+ G+++FD MVRV GL+P
Sbjct: 335 LAMHGRAKDTLDHFEDMERAGVMPSDVTYIGLLSACSHAGLVNEGRWFFDHMVRVSGLEP 394

Query: 182 RIEHYGCLVDLFGRAGLLEEAEKLILSMTIKPDDVIWKALLGACKLHGHIEMGKRIAENL 361
           RIEHYGC+VDL GRAGLLEE+E+LIL+M IKPDDVIWKALLGACK+HG++EMGKR+AE+L
Sbjct: 395 RIEHYGCMVDLLGRAGLLEESEELILNMPIKPDDVIWKALLGACKMHGNVEMGKRVAEHL 454

Query: 362 MELGPRDSGGYVALSNMYASLGDWGSVAETRMRMKELNIRKD 487
           MEL P DSG YVALSN+YASLG+W  VA+ R+ MKE+++RKD
Sbjct: 455 MELAPHDSGSYVALSNIYASLGNWEGVAKVRLMMKEMDVRKD 496


>emb|CAN68467.1| hypothetical protein VITISV_029899 [Vitis vinifera]
          Length = 613

 Score =  251 bits (642), Expect = 3e-65
 Identities = 116/159 (72%), Positives = 143/159 (89%)
 Frame = +2

Query: 2   LAMHGRAKDALDYFSKMEKSGVKPSDVSYIGVLAACSHAGLVDLGKFYFDQMVRVVGLKP 181
           LAMHGRAKD LD+F  ME++GV PSDV+YIG+L+ACSHAGLV+ G+++FD MVRV GL+P
Sbjct: 312 LAMHGRAKDTLDHFEDMERAGVMPSDVTYIGLLSACSHAGLVNEGRWFFDHMVRVSGLEP 371

Query: 182 RIEHYGCLVDLFGRAGLLEEAEKLILSMTIKPDDVIWKALLGACKLHGHIEMGKRIAENL 361
           RIEHYGC+VDL GRAGLLEE+E+LIL+M IKPDDVIWKALLGACK+HG++EMGKR+AE+L
Sbjct: 372 RIEHYGCMVDLLGRAGLLEESEELILNMPIKPDDVIWKALLGACKMHGNVEMGKRVAEHL 431

Query: 362 MELGPRDSGGYVALSNMYASLGDWGSVAETRMRMKELNI 478
           MEL P DSG YVALSN+YASLG+W  VA+ R+ MKE+++
Sbjct: 432 MELAPHDSGSYVALSNIYASLGNWEGVAKVRLMMKEMDV 470


>emb|CBI29241.3| unnamed protein product [Vitis vinifera]
          Length = 514

 Score =  245 bits (626), Expect = 2e-63
 Identities = 113/156 (72%), Positives = 140/156 (89%)
 Frame = +2

Query: 20  AKDALDYFSKMEKSGVKPSDVSYIGVLAACSHAGLVDLGKFYFDQMVRVVGLKPRIEHYG 199
           AKD LD+F  ME++GV PSDV+YIG+L+ACSHAGLV+ G+++FD MVRV GL+PRIEHYG
Sbjct: 224 AKDTLDHFEDMERAGVMPSDVTYIGLLSACSHAGLVNEGRWFFDHMVRVSGLEPRIEHYG 283

Query: 200 CLVDLFGRAGLLEEAEKLILSMTIKPDDVIWKALLGACKLHGHIEMGKRIAENLMELGPR 379
           C+VDL GRAGLLEE+E+LIL+M IKPDDVIWKALLGACK+HG++EMGKR+AE+LMEL P 
Sbjct: 284 CMVDLLGRAGLLEESEELILNMPIKPDDVIWKALLGACKMHGNVEMGKRVAEHLMELAPH 343

Query: 380 DSGGYVALSNMYASLGDWGSVAETRMRMKELNIRKD 487
           DSG YVALSN+YASLG+W  VA+ R+ MKE+++RKD
Sbjct: 344 DSGSYVALSNIYASLGNWEGVAKVRLMMKEMDVRKD 379


>ref|XP_004154482.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 642

 Score =  234 bits (597), Expect = 6e-60
 Identities = 109/161 (67%), Positives = 139/161 (86%)
 Frame = +2

Query: 5   AMHGRAKDALDYFSKMEKSGVKPSDVSYIGVLAACSHAGLVDLGKFYFDQMVRVVGLKPR 184
           AMHGRA+DA+ +F  M K+GV P+DV+YIG+L+ACSHAGLV+ G+ +F  MV+VVGL+PR
Sbjct: 347 AMHGRAEDAIIHFHLMGKAGVTPNDVAYIGILSACSHAGLVEEGRSFFSHMVKVVGLQPR 406

Query: 185 IEHYGCLVDLFGRAGLLEEAEKLILSMTIKPDDVIWKALLGACKLHGHIEMGKRIAENLM 364
           IEHYGC+VDL GRAG LEEAE+LI +M I+PDDVIWKALLGACK+H +++MG+R+AE LM
Sbjct: 407 IEHYGCMVDLLGRAGHLEEAEELIRNMPIEPDDVIWKALLGACKMHKNLKMGERVAETLM 466

Query: 365 ELGPRDSGGYVALSNMYASLGDWGSVAETRMRMKELNIRKD 487
           EL P DSG YVALSN+YASLG+W +VA  R++MK ++IRKD
Sbjct: 467 ELAPHDSGSYVALSNLYASLGNWEAVARVRLKMKGMDIRKD 507


>ref|XP_004139718.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 642

 Score =  234 bits (597), Expect = 6e-60
 Identities = 109/161 (67%), Positives = 139/161 (86%)
 Frame = +2

Query: 5   AMHGRAKDALDYFSKMEKSGVKPSDVSYIGVLAACSHAGLVDLGKFYFDQMVRVVGLKPR 184
           AMHGRA+DA+ +F  M K+GV P+DV+YIG+L+ACSHAGLV+ G+ +F  MV+VVGL+PR
Sbjct: 347 AMHGRAEDAIIHFHLMGKAGVTPNDVAYIGILSACSHAGLVEEGRSFFSHMVKVVGLQPR 406

Query: 185 IEHYGCLVDLFGRAGLLEEAEKLILSMTIKPDDVIWKALLGACKLHGHIEMGKRIAENLM 364
           IEHYGC+VDL GRAG LEEAE+LI +M I+PDDVIWKALLGACK+H +++MG+R+AE LM
Sbjct: 407 IEHYGCMVDLLGRAGHLEEAEELIRNMPIEPDDVIWKALLGACKMHKNLKMGERVAETLM 466

Query: 365 ELGPRDSGGYVALSNMYASLGDWGSVAETRMRMKELNIRKD 487
           EL P DSG YVALSN+YASLG+W +VA  R++MK ++IRKD
Sbjct: 467 ELAPHDSGSYVALSNLYASLGNWEAVARVRLKMKGMDIRKD 507



 Score = 54.7 bits (130), Expect = 8e-06
 Identities = 32/114 (28%), Positives = 63/114 (55%), Gaps = 4/114 (3%)
 Frame = +2

Query: 5   AMHGRAKDALDYFSKMEKSGVKPSDVSYIGVLAACSHAGLVDLGKFYFDQMVRVVGLKPR 184
           A +G   +A++ F +M+ S + P+ V+ + VL A +  G ++LGK+     + +   K +
Sbjct: 246 AQNGHFIEAINLFQEMQSSNIDPNYVTLVSVLPAIARIGALELGKW-----IHLYAGKNK 300

Query: 185 IEHY----GCLVDLFGRAGLLEEAEKLILSMTIKPDDVIWKALLGACKLHGHIE 334
           IE        LVD++ + G ++EA ++  ++  K + + W A++GA  +HG  E
Sbjct: 301 IEIDDVLGSALVDMYSKCGSIDEALQVFETLP-KRNAITWSAIIGAFAMHGRAE 353