BLASTX nr result

ID: Coptis23_contig00038209 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00038209
         (366 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002317301.1| outward rectifying potassium channel [Populu...    80   1e-13
ref|XP_003524789.1| PREDICTED: LOW QUALITY PROTEIN: probable cal...    67   1e-09
gb|ABX60975.1| TPK1 [Nicotiana tabacum]                                67   1e-09
ref|XP_002331863.1| outward rectifying potassium channel [Populu...    67   2e-09
ref|XP_003531079.1| PREDICTED: probable calcium-activated outwar...    66   3e-09

>ref|XP_002317301.1| outward rectifying potassium channel [Populus trichocarpa]
           gi|222860366|gb|EEE97913.1| outward rectifying potassium
           channel [Populus trichocarpa]
          Length = 428

 Score = 80.5 bits (197), Expect = 1e-13
 Identities = 59/147 (40%), Positives = 76/147 (51%), Gaps = 26/147 (17%)
 Frame = -3

Query: 364 EPLLPYFIPXXXXXXXXXXXXSPRRKTNVNQFSSSHPQPILCTLPENNEITLPILAQSPL 185
           EPLLPY               SPR++T         P P+LC LPE++EI+LP+    PL
Sbjct: 4   EPLLPYV--------------SPRKRT-------PQPPPLLCPLPEDDEISLPL----PL 38

Query: 184 TPSELKDRIIFGPCS---------------------PTTTN-DHSTTLDS----QHNSDQ 83
           TPSELKDR+IFGP S                     P+++N D ++ LDS    QH+  Q
Sbjct: 39  TPSELKDRLIFGPSSSSPGDRSPLVEALTFSLNSPRPSSSNQDFNSFLDSPELQQHHHHQ 98

Query: 82  TLNTNCNDPCFSYPWHKSNLHRSKTAP 2
           +   + N     YPW K+NLHRSKTAP
Sbjct: 99  SYLVDPN-----YPWTKTNLHRSKTAP 120


>ref|XP_003524789.1| PREDICTED: LOW QUALITY PROTEIN: probable calcium-activated
           outward-rectifying potassium channel 6-like [Glycine
           max]
          Length = 426

 Score = 67.4 bits (163), Expect = 1e-09
 Identities = 54/148 (36%), Positives = 68/148 (45%), Gaps = 27/148 (18%)
 Frame = -3

Query: 364 EPLLPYFIPXXXXXXXXXXXXSPRRKTNVNQFSSSHPQPILCTLPENNEITLPILAQSPL 185
           EPLLPYF              SPR+K            P LC LPE++EI LP      +
Sbjct: 4   EPLLPYF--------------SPRKK------------PQLCPLPEHDEIVLP------M 31

Query: 184 TPSELKDRIIFGP-------------------------CSPTTTNDHSTT--LDSQHNSD 86
           TPSE KDR+IFGP                         CS + + D++++   DSQ    
Sbjct: 32  TPSEFKDRLIFGPSPSSASPRDPSPLADALTLSHNSPKCSSSNSQDYASSPLFDSQQKQQ 91

Query: 85  QTLNTNCNDPCFSYPWHKSNLHRSKTAP 2
           Q LN+   DP +   W K+NLHRSKTAP
Sbjct: 92  Q-LNSWLLDPNYE-SWRKTNLHRSKTAP 117


>gb|ABX60975.1| TPK1 [Nicotiana tabacum]
          Length = 428

 Score = 67.0 bits (162), Expect = 1e-09
 Identities = 53/140 (37%), Positives = 66/140 (47%), Gaps = 19/140 (13%)
 Frame = -3

Query: 364 EPLLPYFIPXXXXXXXXXXXXSPRRKTNVNQFSSSHPQPI-LCTLPENNEITLPILAQSP 188
           EPLLPY                    T       S+P PI LC LPE+NEI++P     P
Sbjct: 4   EPLLPYV------------------STRTPPHPPSYPAPISLCPLPEDNEISIP----PP 41

Query: 187 LTPSELKDRIIFGPCSPTTT-------NDHSTTLDSQHNSDQTLNTNCN----------D 59
           LTPSELK+R+IFG    + T       N+ ++   S  +S     +N            D
Sbjct: 42  LTPSELKERLIFGTSEASATALDAFTFNNFTSPELSASSSSSAQKSNLENTDIHNSWLLD 101

Query: 58  PCFSYP-WHKSNLHRSKTAP 2
           P  +YP W KSNLHRSKTAP
Sbjct: 102 P--NYPSWTKSNLHRSKTAP 119


>ref|XP_002331863.1| outward rectifying potassium channel [Populus trichocarpa]
           gi|222875381|gb|EEF12512.1| outward rectifying potassium
           channel [Populus trichocarpa]
          Length = 435

 Score = 66.6 bits (161), Expect = 2e-09
 Identities = 56/149 (37%), Positives = 66/149 (44%), Gaps = 28/149 (18%)
 Frame = -3

Query: 364 EPLLPYFIPXXXXXXXXXXXXSPRRKTNVNQFSSSHPQPILCTLPENNEITLPILAQSPL 185
           EPLLPY               SPR++          PQP L  LPE++EI+LP+    PL
Sbjct: 4   EPLLPYL--------------SPRKRI-------PQPQPPLFPLPEDDEISLPL----PL 38

Query: 184 TPSELKDRIIFGPC----------------------SPTTTNDHSTTLDS---QHNSDQT 80
           TPSELKDR+IFGP                       S T   D S+ LDS   QH+  Q 
Sbjct: 39  TPSELKDRLIFGPSSASPRDPSPLLEALTLSLNSPRSSTPNLDFSSFLDSPHLQHHHQQQ 98

Query: 79  LNTNCNDPCFSYP---WHKSNLHRSKTAP 2
                       P   W K+NLHRSKTAP
Sbjct: 99  QQQQQQQSWLVDPDCQWTKTNLHRSKTAP 127


>ref|XP_003531079.1| PREDICTED: probable calcium-activated outward-rectifying potassium
           channel 6-like [Glycine max]
          Length = 430

 Score = 66.2 bits (160), Expect = 3e-09
 Identities = 54/147 (36%), Positives = 65/147 (44%), Gaps = 26/147 (17%)
 Frame = -3

Query: 364 EPLLPYFIPXXXXXXXXXXXXSPRRKTNVNQFSSSHPQPILCTLPENNEITLPILAQSPL 185
           EPLLPYF              SPR+K          P P LC LPE++EI LP      +
Sbjct: 4   EPLLPYF--------------SPRKKPQ--------PFPPLCPLPEHDEIVLP------M 35

Query: 184 TPSELKDRIIFGP----CSPTTTNDHSTTLDSQHNS----------------------DQ 83
           TPSE KDR+IFGP     SP   +  +  L   +NS                       Q
Sbjct: 36  TPSEFKDRLIFGPSPSSASPRDPSPLADALTLSYNSPKCPSSSNSQDYASPPLFDSQQQQ 95

Query: 82  TLNTNCNDPCFSYPWHKSNLHRSKTAP 2
            LN+   DP +   W K+NLHRSKTAP
Sbjct: 96  PLNSWLLDPNYE-SWRKTNLHRSKTAP 121


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