BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00038189
         (826 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002274267.1| PREDICTED: DNA topoisomerase 2-like [Vitis v...   315   6e-84
emb|CAJ44361.1| putative DNA topoisomerase II [Malus x domestica]     288   1e-75
gb|AAN85207.1| DNA topoisomerase II [Nicotiana tabacum] gi|26984...   285   1e-74
dbj|BAE06274.1| topoisomerase II [Scutellaria baicalensis]            278   1e-72
ref|XP_002298421.1| predicted protein [Populus trichocarpa] gi|2...   276   5e-72

>ref|XP_002274267.1| PREDICTED: DNA topoisomerase 2-like [Vitis vinifera]
          Length = 1489

 Score =  315 bits (808), Expect = 6e-84
 Identities = 169/277 (61%), Positives = 191/277 (68%), Gaps = 2/277 (0%)
 Frame = -2

Query: 825  EAMDPWYRGFMGTIEKT-ATKESGVTYTVSGIIEEVNSTTLRITELPIRRWTEDYKAFLE 649
            E MDPWYRGF GTIEKT  TK+  V YTV GIIEEVN TTLRI+ELP+R+WT+DYK FLE
Sbjct: 869  EPMDPWYRGFRGTIEKTDPTKQESVGYTVKGIIEEVNETTLRISELPVRKWTQDYKEFLE 928

Query: 648  SAMTGTDKIKEPFIMDYNVHQD-RAVHFEIFMEENKLNMAKQEGXXXXXXXXXXXXXSNM 472
            S MTG DKIK+PFI DY  H D   VHFE+ M E  L MAKQEG             SNM
Sbjct: 929  SIMTGNDKIKDPFIKDYKEHNDDTTVHFEVIMSEENLLMAKQEGLLQKFKLTTKISTSNM 988

Query: 471  HLFDPKGAIKKFVNPEQILEEFFPLRLEFYDXXXXXXXXXXXXXXXXXXXKVRFILAVVR 292
            HLFD  G IKK+  PEQILEEFF LRLEFY+                   KVRFIL VVR
Sbjct: 989  HLFDSNGTIKKYETPEQILEEFFHLRLEFYEKRKRVLLDNLELELLKLENKVRFILGVVR 1048

Query: 291  GEIIVSNRKRKDLLLELQQKGFTPFPKKIKNVEAALAGAVGDAEENEDNSVIAGSTGGRD 112
            GEIIVSNRKR DL  EL QKGFTPFPKK K+VE A+AGA  D EE E+N+      G R 
Sbjct: 1049 GEIIVSNRKRADLFHELHQKGFTPFPKKSKSVEIAVAGATDDTEEAEENTDAVSKGGVRA 1108

Query: 111  SDYDYLLSMSIGTLTLEKVQELIASKDRLVEDIEEYK 1
            +DY+YLLSM+IGTLTLEKVQEL A +D+L + +++ K
Sbjct: 1109 TDYEYLLSMAIGTLTLEKVQELCADRDKLNKGVDDLK 1145


>emb|CAJ44361.1| putative DNA topoisomerase II [Malus x domestica]
          Length = 1467

 Score =  288 bits (736), Expect = 1e-75
 Identities = 155/274 (56%), Positives = 185/274 (67%), Gaps = 1/274 (0%)
 Frame = -2

Query: 819  MDPWYRGFMGTIEKTATKESGVTYTVSGIIEEVNSTTLRITELPIRRWTEDYKAFLESAM 640
            MDPWYRGF GTIEKT  KESGV+YT  GIIEEV+ T+LRI+ELPIRRWT+DYK FLES  
Sbjct: 838  MDPWYRGFTGTIEKTV-KESGVSYTACGIIEEVSETSLRISELPIRRWTQDYKEFLESIS 896

Query: 639  TGTDKIKEPFIMDYNVHQDRA-VHFEIFMEENKLNMAKQEGXXXXXXXXXXXXXSNMHLF 463
             G DK K+PFI  +  H D + V   + + E KL  AKQEG             SNMHLF
Sbjct: 897  EGNDKAKDPFIEGFTQHSDHSTVDIIVHLREEKLMAAKQEGLLKKFKLTTSISTSNMHLF 956

Query: 462  DPKGAIKKFVNPEQILEEFFPLRLEFYDXXXXXXXXXXXXXXXXXXXKVRFILAVVRGEI 283
            D KG IKK+  PEQILE+FF LRLEFY+                   KVRFIL VV GEI
Sbjct: 957  DRKGVIKKYDTPEQILEDFFHLRLEFYEKRKKVLLEDLELELLKLENKVRFILGVVNGEI 1016

Query: 282  IVSNRKRKDLLLELQQKGFTPFPKKIKNVEAALAGAVGDAEENEDNSVIAGSTGGRDSDY 103
            IVSNRKR DL LELQQKGFTPFPKK K +E  +AGA  + E+ E+NS  A   G R SDY
Sbjct: 1017 IVSNRKRADLFLELQQKGFTPFPKKTKALEPEVAGATENTEDAEENSEAAIEKGARISDY 1076

Query: 102  DYLLSMSIGTLTLEKVQELIASKDRLVEDIEEYK 1
            +YL+SM+IGTLT+E+VQ L+A +D+   +++E +
Sbjct: 1077 EYLISMAIGTLTIERVQALLADRDKANAEVDELR 1110


>gb|AAN85207.1| DNA topoisomerase II [Nicotiana tabacum] gi|26984168|gb|AAN85208.1|
            DNA topoisomerase II [Nicotiana tabacum]
          Length = 1482

 Score =  285 bits (728), Expect = 1e-74
 Identities = 155/276 (56%), Positives = 188/276 (68%), Gaps = 1/276 (0%)
 Frame = -2

Query: 825  EAMDPWYRGFMGTIEKTATKESGVTYTVSGIIEEVNSTTLRITELPIRRWTEDYKAFLES 646
            E MDPWY+GF GTIEKTATKE+G TYTV+GIIEEVN TTLRI+ELP+RRWTEDYK FLES
Sbjct: 865  EPMDPWYKGFKGTIEKTATKEAGATYTVTGIIEEVNETTLRISELPVRRWTEDYKQFLES 924

Query: 645  AMTGTDKIKEPFIMDYNVHQD-RAVHFEIFMEENKLNMAKQEGXXXXXXXXXXXXXSNMH 469
                 DK K+PFI +   + D  +V FE+ M E  L +A+QEG             SNMH
Sbjct: 925  MTVSNDKAKDPFIKEVRAYGDENSVCFEVIMSEENLILAQQEGLLKKFKLATTISTSNMH 984

Query: 468  LFDPKGAIKKFVNPEQILEEFFPLRLEFYDXXXXXXXXXXXXXXXXXXXKVRFILAVVRG 289
            LFD  G IKK+ NPE ILEEF+ +RLE+Y+                   KV+FIL VV+ 
Sbjct: 985  LFDSNGKIKKYDNPEDILEEFYHVRLEYYEKRKKALLEILELELLRIENKVKFILGVVKV 1044

Query: 288  EIIVSNRKRKDLLLELQQKGFTPFPKKIKNVEAALAGAVGDAEENEDNSVIAGSTGGRDS 109
            EIIV+NRKR DLLLEL++KGFTPFPKK K VEA +A    DAE++E+      + G R  
Sbjct: 1045 EIIVNNRKRADLLLELKEKGFTPFPKK-KAVEAVVADTSDDAEDSEEEL----NRGVRAG 1099

Query: 108  DYDYLLSMSIGTLTLEKVQELIASKDRLVEDIEEYK 1
            DYDYLLSM IGTLTLEKVQEL A +D+L  ++E+ +
Sbjct: 1100 DYDYLLSMPIGTLTLEKVQELCAERDQLNGEVEDMR 1135


>dbj|BAE06274.1| topoisomerase II [Scutellaria baicalensis]
          Length = 1469

 Score =  278 bits (710), Expect = 1e-72
 Identities = 149/278 (53%), Positives = 183/278 (65%), Gaps = 3/278 (1%)
 Frame = -2

Query: 825  EAMDPWYRGFMGTIEKTATKESGVTYTVSGIIEEVNSTTLRITELPIRRWTEDYKAFLES 646
            E M PWY+GF+G++EKTATKE+G +YTVSGIIEEV+ TTL I ELPIRRWT+DYK FLES
Sbjct: 878  EPMHPWYKGFLGSVEKTATKEAGASYTVSGIIEEVDDTTLCIKELPIRRWTQDYKEFLES 937

Query: 645  AMTGTDKIKEPFI---MDYNVHQDRAVHFEIFMEENKLNMAKQEGXXXXXXXXXXXXXSN 475
                 DK K+PFI    DY+  +   V+F + M+  KL  AK+EG              N
Sbjct: 938  VSAENDKSKDPFIEGCRDYSGSE--LVNFLVGMKPEKLEAAKREGLLKKFKLTTSISTCN 995

Query: 474  MHLFDPKGAIKKFVNPEQILEEFFPLRLEFYDXXXXXXXXXXXXXXXXXXXKVRFILAVV 295
            MHLFD KG IKK+  PEQILEEFF +RLE Y+                   K RFI  VV
Sbjct: 996  MHLFDSKGVIKKYDTPEQILEEFFYIRLELYEKRKKVLLDILEHDMLKCDNKYRFIRCVV 1055

Query: 294  RGEIIVSNRKRKDLLLELQQKGFTPFPKKIKNVEAALAGAVGDAEENEDNSVIAGSTGGR 115
             G IIVSNRKR D+  EL++KGFTPFPKK    E A+AGA  D EE E+NS +  + G  
Sbjct: 1056 EGSIIVSNRKRTDVFRELKEKGFTPFPKKKNRAEVAIAGATDDGEETEENSEVPIAPGVS 1115

Query: 114  DSDYDYLLSMSIGTLTLEKVQELIASKDRLVEDIEEYK 1
             SDYDYLLS++IGTLT EK+QEL A +D+L++++EE K
Sbjct: 1116 SSDYDYLLSLAIGTLTTEKMQELRAERDKLMQEVEELK 1153


>ref|XP_002298421.1| predicted protein [Populus trichocarpa] gi|222845679|gb|EEE83226.1|
            predicted protein [Populus trichocarpa]
          Length = 1468

 Score =  276 bits (705), Expect = 5e-72
 Identities = 155/281 (55%), Positives = 186/281 (66%), Gaps = 6/281 (2%)
 Frame = -2

Query: 825  EAMDPWYRGFMGTIEKTATKESGVTYTVSGIIEEVNSTTLRITELPIRRWTEDYKAFLES 646
            E M+PWYRGF GTIEK A+KE+G +YTV+G+I EVN TTLRITELPIRRWT+DYKAFL S
Sbjct: 866  EPMNPWYRGFKGTIEKGASKEAGCSYTVNGVINEVNETTLRITELPIRRWTDDYKAFLNS 925

Query: 645  AMTGT-----DKIKEPFIMDYNVHQDRA-VHFEIFMEENKLNMAKQEGXXXXXXXXXXXX 484
               G      +  K+PFI D+  + D A V FE+ + E  + +AKQEG            
Sbjct: 926  VTEGNRDENGNLPKDPFIKDFRKYGDDATVVFEVLLSEENMMIAKQEGLLKKFKLTTTIS 985

Query: 483  XSNMHLFDPKGAIKKFVNPEQILEEFFPLRLEFYDXXXXXXXXXXXXXXXXXXXKVRFIL 304
             SNMHLFD  G IKK+ NPEQILEEFF LRLE+Y+                   KVRFIL
Sbjct: 986  TSNMHLFDSAGVIKKYDNPEQILEEFFHLRLEYYERRKKVLLENLEFELLKLENKVRFIL 1045

Query: 303  AVVRGEIIVSNRKRKDLLLELQQKGFTPFPKKIKNVEAALAGAVGDAEENEDNSVIAGST 124
             VVRGEIIV+NRKR DL LEL QKGFTP PKK K   A +AGA  D +E ED+  ++G  
Sbjct: 1046 GVVRGEIIVNNRKRADLFLELHQKGFTPIPKKSK---AVVAGATDDKDEAEDSLEVSGV- 1101

Query: 123  GGRDSDYDYLLSMSIGTLTLEKVQELIASKDRLVEDIEEYK 1
              R SDYDYLLSM+IGTLTLEKVQ+L A  D+L  +++  +
Sbjct: 1102 --RASDYDYLLSMAIGTLTLEKVQQLCADHDKLNGEVDNLR 1140