BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00038168
         (255 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002277780.1| PREDICTED: DEAD-box ATP-dependent RNA helica...   141   5e-32
emb|CBI26203.3| unnamed protein product [Vitis vinifera]              141   5e-32
gb|AAG34873.1|AF261020_1 putative chloroplast RNA helicase VDL i...   134   8e-30
gb|AAG38497.1|AF261032_5 putative chloroplast RNA helicase VDL' ...   132   3e-29
gb|AAG38498.1|AF261032_6 putative chloroplast RNA helicase VDL' ...   132   3e-29

>ref|XP_002277780.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 58,
           chloroplastic-like [Vitis vinifera]
          Length = 482

 Score =  141 bits (356), Expect = 5e-32
 Identities = 72/84 (85%), Positives = 76/84 (90%)
 Frame = +3

Query: 3   GSGKTLAYLLLIFSVINVQRSTVQALIVVPTRELGTQVAKVARMLAAKPMELKLEGKTCT 182
           GSGKTL YLLLIFSV+N + S VQALIVVPTRELG QV KVARMLAAKPME +LE K+CT
Sbjct: 126 GSGKTLTYLLLIFSVVNTKISAVQALIVVPTRELGIQVTKVARMLAAKPMEPELEQKSCT 185

Query: 183 VMALLDGGMLKRHKSWLKAEPPTI 254
           VMALLDGGMLKRHKSWLKAEPPTI
Sbjct: 186 VMALLDGGMLKRHKSWLKAEPPTI 209


>emb|CBI26203.3| unnamed protein product [Vitis vinifera]
          Length = 486

 Score =  141 bits (356), Expect = 5e-32
 Identities = 72/84 (85%), Positives = 76/84 (90%)
 Frame = +3

Query: 3   GSGKTLAYLLLIFSVINVQRSTVQALIVVPTRELGTQVAKVARMLAAKPMELKLEGKTCT 182
           GSGKTL YLLLIFSV+N + S VQALIVVPTRELG QV KVARMLAAKPME +LE K+CT
Sbjct: 130 GSGKTLTYLLLIFSVVNTKISAVQALIVVPTRELGIQVTKVARMLAAKPMEPELEQKSCT 189

Query: 183 VMALLDGGMLKRHKSWLKAEPPTI 254
           VMALLDGGMLKRHKSWLKAEPPTI
Sbjct: 190 VMALLDGGMLKRHKSWLKAEPPTI 213


>gb|AAG34873.1|AF261020_1 putative chloroplast RNA helicase VDL isoform 1 [Nicotiana tabacum]
           gi|11385590|gb|AAG34876.1|AF261021_1 putative
           chloroplast RNA helicase VDL isoform 1 [Nicotiana
           tabacum]
          Length = 466

 Score =  134 bits (337), Expect = 8e-30
 Identities = 70/84 (83%), Positives = 73/84 (86%)
 Frame = +3

Query: 3   GSGKTLAYLLLIFSVINVQRSTVQALIVVPTRELGTQVAKVARMLAAKPMELKLEGKTCT 182
           GSGKTLAYLL I SVI+ QRS VQALIVVPTRELG QV KVARMLAAKP EL+   K+CT
Sbjct: 114 GSGKTLAYLLQILSVIDSQRSAVQALIVVPTRELGMQVTKVARMLAAKPSELESGPKSCT 173

Query: 183 VMALLDGGMLKRHKSWLKAEPPTI 254
           VMALLDGGML RHKSWLKAEPPTI
Sbjct: 174 VMALLDGGMLNRHKSWLKAEPPTI 197


>gb|AAG38497.1|AF261032_5 putative chloroplast RNA helicase VDL' isoform 5 [Nicotiana
           tabacum]
          Length = 289

 Score =  132 bits (332), Expect = 3e-29
 Identities = 69/84 (82%), Positives = 72/84 (85%)
 Frame = +3

Query: 3   GSGKTLAYLLLIFSVINVQRSTVQALIVVPTRELGTQVAKVARMLAAKPMELKLEGKTCT 182
           GSGKTLAYLL + SVI+ QRS VQALIVVPTRELG QV KVAR LAAKP ELK   K+CT
Sbjct: 114 GSGKTLAYLLQMLSVIDSQRSAVQALIVVPTRELGMQVTKVARTLAAKPSELKSGPKSCT 173

Query: 183 VMALLDGGMLKRHKSWLKAEPPTI 254
           VMALLDGGML RHKSWLKAEPPTI
Sbjct: 174 VMALLDGGMLNRHKSWLKAEPPTI 197


>gb|AAG38498.1|AF261032_6 putative chloroplast RNA helicase VDL' isoform 6 [Nicotiana
           tabacum]
          Length = 226

 Score =  132 bits (332), Expect = 3e-29
 Identities = 69/84 (82%), Positives = 72/84 (85%)
 Frame = +3

Query: 3   GSGKTLAYLLLIFSVINVQRSTVQALIVVPTRELGTQVAKVARMLAAKPMELKLEGKTCT 182
           GSGKTLAYLL + SVI+ QRS VQALIVVPTRELG QV KVAR LAAKP ELK   K+CT
Sbjct: 114 GSGKTLAYLLQMLSVIDSQRSAVQALIVVPTRELGMQVTKVARTLAAKPSELKSGPKSCT 173

Query: 183 VMALLDGGMLKRHKSWLKAEPPTI 254
           VMALLDGGML RHKSWLKAEPPTI
Sbjct: 174 VMALLDGGMLNRHKSWLKAEPPTI 197