BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00038156
         (391 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002278547.2| PREDICTED: F-box protein SKIP23-like [Vitis ...    69   3e-10
ref|XP_002327621.1| predicted protein [Populus trichocarpa] gi|2...    69   5e-10
ref|XP_003602301.1| F-box protein SKIP23 [Medicago truncatula] g...    67   1e-09
ref|XP_002279526.2| PREDICTED: LOW QUALITY PROTEIN: F-box protei...    67   1e-09
emb|CAN66619.1| hypothetical protein VITISV_028369 [Vitis vinifera]    66   3e-09

>ref|XP_002278547.2| PREDICTED: F-box protein SKIP23-like [Vitis vinifera]
          Length = 405

 Score = 69.3 bits (168), Expect = 3e-10
 Identities = 49/139 (35%), Positives = 68/139 (48%), Gaps = 10/139 (7%)
 Frame = +2

Query: 5   DIAGETGCISDIVHYMGKFVVVCNSGRGFLIDPFTLSVTLLVDRA-GYEGT-KRLVESNG 178
           D   E     D+++Y G+F  +   GR  +ID  +L  T L     G  GT K  VES G
Sbjct: 212 DDGAEKSHFDDVIYYKGRFYAIDYKGRIVVIDADSLKATELASPVHGSRGTHKHFVESFG 271

Query: 179 HLFLVE--------IFSNASPWRHGTGGQFLPIVCEVFRLFEGKEQWVQVDSLADSVFLV 334
            LFLV+        IF N           + P+  EVF+  E +++W  V  + D V  V
Sbjct: 272 ELFLVDKYLDDELQIFCNDYSDIVADVPDY-PVHFEVFKFIEEEQKWDWVSDIGDRVLFV 330

Query: 335 GPECSFSVSAFDFPGCKGN 391
           G + +FS+S+ DFPG KGN
Sbjct: 331 GDDRTFSLSSTDFPGFKGN 349


>ref|XP_002327621.1| predicted protein [Populus trichocarpa] gi|222836706|gb|EEE75099.1|
           predicted protein [Populus trichocarpa]
          Length = 391

 Score = 68.6 bits (166), Expect = 5e-10
 Identities = 47/133 (35%), Positives = 66/133 (49%), Gaps = 14/133 (10%)
 Frame = +2

Query: 35  DIVHYMGKFVVVCNSGRGFLIDPFTLSVTLLVDRAGYEGTKRLVESNGHLFLVEIFSN-- 208
           DI+ Y G+  VV   G  + I+     +       GY   K LVES+G  ++V+ F +  
Sbjct: 207 DIIVYRGQAYVVDRLGTIYWINSSLNLIQYSPPLYGYGSQKTLVESDGDFYVVDRFFHGE 266

Query: 209 ------------ASPWRHGTGGQFLPIVCEVFRLFEGKEQWVQVDSLADSVFLVGPECSF 352
                       A P+R+    Q   +  +V++L E    WV + SL D VF++G ECSF
Sbjct: 267 RRTWNDELHSDVAYPFRYLPICQAKTVSIKVYKLDEEWGTWVNISSLGDKVFVLGNECSF 326

Query: 353 SVSAFDFPGCKGN 391
           SVSA DF G KGN
Sbjct: 327 SVSAKDFSGRKGN 339


>ref|XP_003602301.1| F-box protein SKIP23 [Medicago truncatula]
           gi|355491349|gb|AES72552.1| F-box protein SKIP23
           [Medicago truncatula]
          Length = 466

 Score = 67.4 bits (163), Expect = 1e-09
 Identities = 48/124 (38%), Positives = 64/124 (51%), Gaps = 2/124 (1%)
 Frame = +2

Query: 26  CISDIVHYMGKFVVVCNSGRGFLIDPFTLSVTLLVDRAGYEG--TKRLVESNGHLFLVEI 199
           C  DI  +  +F VV   GR F I P   SV L+ +   Y G   K LVES G L LV+I
Sbjct: 218 CFQDICVFKKRFCVVNKGGRTFAIGP-DYSVQLVAEYLVYGGGDVKFLVESEGELLLVDI 276

Query: 200 FSNASPWRHGTGGQFLPIVCEVFRLFEGKEQWVQVDSLADSVFLVGPECSFSVSAFDFPG 379
           + +      G  G  L    +VFRL + +++WV++ SL D V  +G  CSF  SA +   
Sbjct: 277 YHSHCVGFPGEDGFNL----DVFRLAKKEKKWVKLTSLGDRVLFLGNGCSFFASASNLSV 332

Query: 380 CKGN 391
            KGN
Sbjct: 333 VKGN 336


>ref|XP_002279526.2| PREDICTED: LOW QUALITY PROTEIN: F-box protein SKIP23-like [Vitis
           vinifera]
          Length = 387

 Score = 67.0 bits (162), Expect = 1e-09
 Identities = 45/124 (36%), Positives = 67/124 (54%), Gaps = 5/124 (4%)
 Frame = +2

Query: 35  DIVHYMGKFVVVCNSGRGFLIDPFTLS--VTLLVDRAGYEGTKR-LVESNGHLFLVEIFS 205
           D++ + GKF  V N+GR  ++D    S  V  L   + + G K+ LVES G L LV+ + 
Sbjct: 203 DVIFFDGKFYAVDNTGRTVVVDVADGSSPVVNLAASSVFGGDKKVLVESEGELLLVDTYF 262

Query: 206 NA--SPWRHGTGGQFLPIVCEVFRLFEGKEQWVQVDSLADSVFLVGPECSFSVSAFDFPG 379
                   H        I  +VFRL + +++WV+++SL D +  +G + SFS  A DF G
Sbjct: 263 TMYHDDDEHVRWMIERMIHFKVFRLDQREQKWVEIESLGDRLLFLGDDSSFSARASDFYG 322

Query: 380 CKGN 391
           CKGN
Sbjct: 323 CKGN 326


>emb|CAN66619.1| hypothetical protein VITISV_028369 [Vitis vinifera]
          Length = 986

 Score = 66.2 bits (160), Expect = 3e-09
 Identities = 44/131 (33%), Positives = 63/131 (48%), Gaps = 2/131 (1%)
 Frame = +2

Query: 5   DIAGETGCISDIVHYMGKFVVVCNSGRGFLIDPFTLSVTLLVDRA-GYEGT-KRLVESNG 178
           D   E     D+++Y G+F  +   GR  +ID  +L  T L     G  GT K  VES G
Sbjct: 212 DDGAEKSHFDDVIYYKGRFYAIDYKGRIVVIDADSLKATELASPVHGSRGTHKHFVESFG 271

Query: 179 HLFLVEIFSNASPWRHGTGGQFLPIVCEVFRLFEGKEQWVQVDSLADSVFLVGPECSFSV 358
            L +V    +             P+  EVF+  E +++W  V  + D V  VG + +FS+
Sbjct: 272 ELDIVADVPD------------YPVHFEVFKFIEEEQKWDWVSDIGDRVLFVGDDRTFSL 319

Query: 359 SAFDFPGCKGN 391
           S+ DFPG KGN
Sbjct: 320 SSTDFPGFKGN 330



 Score = 64.3 bits (155), Expect = 1e-08
 Identities = 44/134 (32%), Positives = 65/134 (48%), Gaps = 5/134 (3%)
 Frame = +2

Query: 5    DIAGETGCISDIVHYMGKFVVVCNSGRGFLIDPFTLSVTLLVDRA-GYEGTKR-LVESNG 178
            D   E     D+++Y G+F  +   GR  +ID  +L  T L     G  G  R  VES G
Sbjct: 602  DDGAEKSHFDDVIYYKGRFYAIDYXGRIVVIDADSLKATELASPVHGSRGNHRHFVESFG 661

Query: 179  HLFLVEIFSNASPWRHGTGGQFLP---IVCEVFRLFEGKEQWVQVDSLADSVFLVGPECS 349
             LFLV+ +       +      +P   +  EVF+  E +++W  V  + D V  V  + +
Sbjct: 662  ELFLVDKYVVTFCNNYSDIVSVVPDYPVHXEVFKFIEEEQKWDWVSGIGDRVLFVDDDRT 721

Query: 350  FSVSAFDFPGCKGN 391
            FS+S+ DFPG KGN
Sbjct: 722  FSLSSTDFPGFKGN 735