BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00038153
         (537 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI24452.3| unnamed protein product [Vitis vinifera]              220   1e-55
ref|XP_003629226.1| Pentatricopeptide repeat-containing protein ...   216   2e-54
ref|XP_003520093.1| PREDICTED: pentatricopeptide repeat-containi...   199   2e-49
gb|ACU21153.1| unknown [Glycine max]                                  194   7e-48
ref|XP_004154387.1| PREDICTED: pentatricopeptide repeat-containi...   149   3e-34

>emb|CBI24452.3| unnamed protein product [Vitis vinifera]
          Length = 503

 Score =  220 bits (560), Expect = 1e-55
 Identities = 103/176 (58%), Positives = 134/176 (76%)
 Frame = +2

Query: 2   IHAQIITSGYEQNQFLAAKLISRYAERSDSSMGDVRRVFDCVMERDVLLWNVIIRGYANT 181
           IHAQII  G+E+N FL AKL+ +YA+  +S++ D R+VFDC+ +RDV +WN II+GYAN 
Sbjct: 26  IHAQIIIGGFEENPFLGAKLVGKYAQCYESNIEDARKVFDCLPDRDVFVWNTIIQGYANL 85

Query: 182 GPFSEAVSMFDQMRLSGFCANKYTYPFVIKACAVSGARIKGRLIHGHLVKVGLEFDLFVG 361
           GPF EA+++++ MR SG  AN+YT+PFV+KAC       KG+ IHGH+VK GL+ DLFVG
Sbjct: 86  GPFMEALNIYEYMRCSGVAANRYTFPFVLKACGAMKDGKKGQAIHGHVVKHGLDLDLFVG 145

Query: 362 NSLVAFYAKCREIETSRKVFDETVVKDIVSWNSMIAGYAQNDFPHEAIKLFHQLLQ 529
           N+LVAFYAKC EI  SR+VFD    KDIV+WNSMI+GYA N    +A+ LFH +LQ
Sbjct: 146 NALVAFYAKCNEIGASRRVFDMISEKDIVTWNSMISGYAINGCADDALVLFHNMLQ 201



 Score =  112 bits (279), Expect = 5e-23
 Identities = 60/179 (33%), Positives = 104/179 (58%), Gaps = 4/179 (2%)
 Frame = +2

Query: 2   IHAQIITSGYEQNQFLAAKLISRYAERSDSSMGDVRRVFDCVMERDVLLWNVIIRGYANT 181
           IH  ++  G + + F+   L++ YA+ ++  +G  RRVFD + E+D++ WN +I GYA  
Sbjct: 129 IHGHVVKHGLDLDLFVGNALVAFYAKCNE--IGASRRVFDMISEKDIVTWNSMISGYAIN 186

Query: 182 GPFSEAVSMFDQM-RLSG---FCANKYTYPFVIKACAVSGARIKGRLIHGHLVKVGLEFD 349
           G   +A+ +F  M ++ G   +  +  T   ++ ACA + A  +G  IH +++K G+E D
Sbjct: 187 GCADDALVLFHNMLQVQGDTVYAPDSATLVAILPACAQAAAIQEGLWIHSYVIKSGIELD 246

Query: 350 LFVGNSLVAFYAKCREIETSRKVFDETVVKDIVSWNSMIAGYAQNDFPHEAIKLFHQLL 526
             +G+ L+A YA C  + ++R VFD    K+IV WN++I  Y  +    EA+K+F  L+
Sbjct: 247 AALGSGLIAMYANCGLLNSARDVFDRIDDKNIVVWNAIIRCYGMHGHADEALKMFSGLI 305


>ref|XP_003629226.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|355523248|gb|AET03702.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 510

 Score =  216 bits (550), Expect = 2e-54
 Identities = 100/175 (57%), Positives = 135/175 (77%)
 Frame = +2

Query: 5   HAQIITSGYEQNQFLAAKLISRYAERSDSSMGDVRRVFDCVMERDVLLWNVIIRGYANTG 184
           HAQII  G++Q+ F+AAKLI +Y++   +++   R+VFD + ERDV  WN +I+GYAN G
Sbjct: 40  HAQIIIGGHKQDPFIAAKLIDKYSQLGGTNVEHARKVFDDLSERDVFCWNNVIKGYANMG 99

Query: 185 PFSEAVSMFDQMRLSGFCANKYTYPFVIKACAVSGARIKGRLIHGHLVKVGLEFDLFVGN 364
           PF+EA+ +++ MRLSG   N+YTYPFV+KAC      +KGR+IHG++VK GLEFDLFVGN
Sbjct: 100 PFAEALHVYNAMRLSGAAPNRYTYPFVLKACGAERDCLKGRIIHGNVVKCGLEFDLFVGN 159

Query: 365 SLVAFYAKCREIETSRKVFDETVVKDIVSWNSMIAGYAQNDFPHEAIKLFHQLLQ 529
           + VAFYAKC+EIE SRKVFDE + +DIVSWNSM++GY  N +  EA+ LF  +L+
Sbjct: 160 AFVAFYAKCKEIEASRKVFDEMLERDIVSWNSMMSGYIANGYVDEAVMLFCDMLR 214



 Score = 96.7 bits (239), Expect = 2e-18
 Identities = 55/178 (30%), Positives = 95/178 (53%), Gaps = 2/178 (1%)
 Frame = +2

Query: 2   IHAQIITSGYEQNQFLAAKLISRYAERSDSSMGDVRRVFDCVMERDVLLWNVIIRGYANT 181
           IH  ++  G E + F+    ++ YA+  +      R+VFD ++ERD++ WN ++ GY   
Sbjct: 142 IHGNVVKCGLEFDLFVGNAFVAFYAKCKEIEAS--RKVFDEMLERDIVSWNSMMSGYIAN 199

Query: 182 GPFSEAVSMF-DQMRLSGF-CANKYTYPFVIKACAVSGARIKGRLIHGHLVKVGLEFDLF 355
           G   EAV +F D +R  G    +  T   V+ A A       G  IH ++VK G++ D  
Sbjct: 200 GYVDEAVMLFCDMLRDDGIGFPDNATLVTVLPAFAEKADIHAGYWIHCYIVKTGMKLDPA 259

Query: 356 VGNSLVAFYAKCREIETSRKVFDETVVKDIVSWNSMIAGYAQNDFPHEAIKLFHQLLQ 529
           VG  L+  Y+ C  I  ++ VFD+   ++++ W+++I  Y  + F  EA+ +F QL++
Sbjct: 260 VGCGLITLYSNCGYIRMAKAVFDQIPDRNVIVWSAIIRCYGMHGFAQEALSMFRQLVE 317


>ref|XP_003520093.1| PREDICTED: pentatricopeptide repeat-containing protein At3g24000,
           mitochondrial-like [Glycine max]
          Length = 503

 Score =  199 bits (506), Expect = 2e-49
 Identities = 95/175 (54%), Positives = 127/175 (72%)
 Frame = +2

Query: 5   HAQIITSGYEQNQFLAAKLISRYAERSDSSMGDVRRVFDCVMERDVLLWNVIIRGYANTG 184
           HAQ++  G+EQ+ F+AA+LI +Y+  S+  +   R+VFD + E DV   NV+I+ YAN  
Sbjct: 40  HAQVVVRGHEQDPFIAARLIDKYSHFSN--LDHARKVFDNLSEPDVFCCNVVIKVYANAD 97

Query: 185 PFSEAVSMFDQMRLSGFCANKYTYPFVIKACAVSGARIKGRLIHGHLVKVGLEFDLFVGN 364
           PF EA+ ++D MR  G   N YTYPFV+KAC   GA  KGR+IHGH VK G++ DLFVGN
Sbjct: 98  PFGEALKVYDAMRWRGITPNYYTYPFVLKACGAEGASKKGRVIHGHAVKCGMDLDLFVGN 157

Query: 365 SLVAFYAKCREIETSRKVFDETVVKDIVSWNSMIAGYAQNDFPHEAIKLFHQLLQ 529
           +LVAFYAKC+++E SRKVFDE   +DIVSWNSMI+GY  N +  +AI LF+ +L+
Sbjct: 158 ALVAFYAKCQDVEVSRKVFDEIPHRDIVSWNSMISGYTVNGYVDDAILLFYDMLR 212



 Score = 87.8 bits (216), Expect = 9e-16
 Identities = 51/177 (28%), Positives = 90/177 (50%), Gaps = 2/177 (1%)
 Frame = +2

Query: 2   IHAQIITSGYEQNQFLAAKLISRYAERSDSSMGDVRRVFDCVMERDVLLWNVIIRGYANT 181
           IH   +  G + + F+   L++ YA+  D  +   R+VFD +  RD++ WN +I GY   
Sbjct: 140 IHGHAVKCGMDLDLFVGNALVAFYAKCQDVEVS--RKVFDEIPHRDIVSWNSMISGYTVN 197

Query: 182 GPFSEAVSMF-DQMRLSGFCANKY-TYPFVIKACAVSGARIKGRLIHGHLVKVGLEFDLF 355
           G   +A+ +F D +R        + T+  V+ A A +     G  IH ++VK  +  D  
Sbjct: 198 GYVDDAILLFYDMLRDESVGGPDHATFVTVLPAFAQAADIHAGYWIHCYIVKTRMGLDSA 257

Query: 356 VGNSLVAFYAKCREIETSRKVFDETVVKDIVSWNSMIAGYAQNDFPHEAIKLFHQLL 526
           VG  L++ Y+ C  +  +R +FD    + ++ W+++I  Y  +    EA+ LF QL+
Sbjct: 258 VGTGLISLYSNCGYVRMARAIFDRISDRSVIVWSAIIRCYGTHGLAQEALALFRQLV 314


>gb|ACU21153.1| unknown [Glycine max]
          Length = 529

 Score =  194 bits (493), Expect = 7e-48
 Identities = 93/175 (53%), Positives = 125/175 (71%)
 Frame = +2

Query: 5   HAQIITSGYEQNQFLAAKLISRYAERSDSSMGDVRRVFDCVMERDVLLWNVIIRGYANTG 184
           HAQ++  G+EQ+ F+AA+LI +Y+  S+  +   R+VFD + E DV   NV+I+ YAN  
Sbjct: 40  HAQVVVRGHEQDPFIAARLIDKYSHFSN--LDHARKVFDNLSEPDVFCCNVVIKVYANAD 97

Query: 185 PFSEAVSMFDQMRLSGFCANKYTYPFVIKACAVSGARIKGRLIHGHLVKVGLEFDLFVGN 364
           PF EA+ + D MR  G   N YTYPFV+KAC   GA  KGR+IH H VK G++ DLFVGN
Sbjct: 98  PFGEALKVHDAMRWRGITPNYYTYPFVLKACGAEGASKKGRVIHEHAVKCGMDLDLFVGN 157

Query: 365 SLVAFYAKCREIETSRKVFDETVVKDIVSWNSMIAGYAQNDFPHEAIKLFHQLLQ 529
           +LVAFYAKC+++E SRKVFDE   +DIVSWNSM++GY  N +  +AI LF+ +L+
Sbjct: 158 ALVAFYAKCQDVEVSRKVFDEIPHRDIVSWNSMVSGYTVNGYVDDAILLFYDMLR 212



 Score = 87.0 bits (214), Expect = 2e-15
 Identities = 50/177 (28%), Positives = 90/177 (50%), Gaps = 2/177 (1%)
 Frame = +2

Query: 2   IHAQIITSGYEQNQFLAAKLISRYAERSDSSMGDVRRVFDCVMERDVLLWNVIIRGYANT 181
           IH   +  G + + F+   L++ YA+  D  +   R+VFD +  RD++ WN ++ GY   
Sbjct: 140 IHEHAVKCGMDLDLFVGNALVAFYAKCQDVEVS--RKVFDEIPHRDIVSWNSMVSGYTVN 197

Query: 182 GPFSEAVSMF-DQMRLSGFCANKY-TYPFVIKACAVSGARIKGRLIHGHLVKVGLEFDLF 355
           G   +A+ +F D +R        + T+  V+ A A +     G  IH ++VK  +  D  
Sbjct: 198 GYVDDAILLFYDMLRDESVGGPDHATFVTVLPAFAQAADIHAGYWIHCYIVKTRMGLDSA 257

Query: 356 VGNSLVAFYAKCREIETSRKVFDETVVKDIVSWNSMIAGYAQNDFPHEAIKLFHQLL 526
           VG  L++ Y+ C  +  +R +FD    + ++ W+++I  Y  +    EA+ LF QL+
Sbjct: 258 VGTGLISLYSNCGYVRMARAIFDRISDRSVIVWSAIIRCYGTHGLAQEALALFRQLV 314


>ref|XP_004154387.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Cucumis sativus]
           gi|449522468|ref|XP_004168248.1| PREDICTED:
           pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Cucumis sativus]
          Length = 574

 Score =  149 bits (376), Expect = 3e-34
 Identities = 73/170 (42%), Positives = 114/170 (67%)
 Frame = +2

Query: 2   IHAQIITSGYEQNQFLAAKLISRYAERSDSSMGDVRRVFDCVMERDVLLWNVIIRGYANT 181
           +HA+I   G   N  LA KL++ Y     +S+ +   +FD + +R++ LWNV+IRGYA  
Sbjct: 23  LHARICQVGISFNPLLATKLVNLYC--ICNSLTNAHLLFDRISKRNLFLWNVMIRGYAWN 80

Query: 182 GPFSEAVSMFDQMRLSGFCANKYTYPFVIKACAVSGARIKGRLIHGHLVKVGLEFDLFVG 361
           GP+  A+S++ QMR  G   +K+T+PFV+KAC+   A  +G+ IH  +++ GLE D+FVG
Sbjct: 81  GPYELAISLYYQMRDYGLVPDKFTFPFVLKACSALSAMEEGKKIHKDVIRSGLESDVFVG 140

Query: 362 NSLVAFYAKCREIETSRKVFDETVVKDIVSWNSMIAGYAQNDFPHEAIKL 511
            +L+  YAKC  +E++R+VFD+   +D+V WNSM+A Y+QN  P E++ L
Sbjct: 141 AALIDMYAKCGCVESARQVFDKIDERDVVCWNSMLATYSQNGQPDESLAL 190



 Score =  103 bits (256), Expect = 2e-20
 Identities = 59/177 (33%), Positives = 97/177 (54%)
 Frame = +2

Query: 2   IHAQIITSGYEQNQFLAAKLISRYAERSDSSMGDVRRVFDCVMERDVLLWNVIIRGYANT 181
           IH  +I SG E + F+ A LI  YA+     +   R+VFD + ERDV+ WN ++  Y+  
Sbjct: 124 IHKDVIRSGLESDVFVGAALIDMYAKCG--CVESARQVFDKIDERDVVCWNSMLATYSQN 181

Query: 182 GPFSEAVSMFDQMRLSGFCANKYTYPFVIKACAVSGARIKGRLIHGHLVKVGLEFDLFVG 361
           G   E++++   M  +G    + T+   I A A +G   +G+ +HG+  + G E +  V 
Sbjct: 182 GQPDESLALCRVMAFNGLKPTEGTFVISIAASADNGLLPQGKELHGYSWRHGFESNDKVK 241

Query: 362 NSLVAFYAKCREIETSRKVFDETVVKDIVSWNSMIAGYAQNDFPHEAIKLFHQLLQK 532
            +L+  YAK   +  +R +F+    K +VSWN+MI GYA +   +EA+ LF ++  K
Sbjct: 242 TALMDMYAKSGSVNVARSLFELLEEKRVVSWNAMITGYAMHGHANEALDLFKEMKGK 298



 Score = 57.4 bits (137), Expect = 1e-06
 Identities = 27/90 (30%), Positives = 47/90 (52%)
 Frame = +2

Query: 254 YPFVIKACAVSGARIKGRLIHGHLVKVGLEFDLFVGNSLVAFYAKCREIETSRKVFDETV 433
           Y  ++++C V  A   G+ +H  + +VG+ F+  +   LV  Y  C  +  +  +FD   
Sbjct: 4   YASLLQSCVVRKAIEPGKQLHARICQVGISFNPLLATKLVNLYCICNSLTNAHLLFDRIS 63

Query: 434 VKDIVSWNSMIAGYAQNDFPHEAIKLFHQL 523
            +++  WN MI GYA N     AI L++Q+
Sbjct: 64  KRNLFLWNVMIRGYAWNGPYELAISLYYQM 93