BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00038142
         (339 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002274209.2| PREDICTED: pentatricopeptide repeat-containi...   121   7e-26
ref|XP_002523876.1| pentatricopeptide repeat-containing protein,...   121   7e-26
ref|XP_004159118.1| PREDICTED: LOW QUALITY PROTEIN: pentatricope...   120   1e-25
ref|XP_004139593.1| PREDICTED: pentatricopeptide repeat-containi...   120   1e-25
dbj|BAD16914.1| pentatricopeptide (PPR) repeat-containing protei...   119   2e-25

>ref|XP_002274209.2| PREDICTED: pentatricopeptide repeat-containing protein At1g05750,
           chloroplastic-like [Vitis vinifera]
          Length = 518

 Score =  121 bits (303), Expect = 7e-26
 Identities = 57/95 (60%), Positives = 73/95 (76%)
 Frame = +3

Query: 54  GQQVHGLATKLGYEADIHVGNSLIDMYAKHGNLEFARQLFRNMETRSLVSWNSMIVGLAI 233
           G  ++    K  ++ +I + NSLIDMY++ G +  ARQ+F  M  RSLVSWNSMIVG A+
Sbjct: 243 GLWINRFVMKQDFKDNIKISNSLIDMYSRCGCIRLARQVFEQMPKRSLVSWNSMIVGFAL 302

Query: 234 NGHAEDALEHFCMMQKEGFKPDGVSYTGALTACSH 338
           NGHAE+ALE F +M+KEGF+PDGVS+TGALTACSH
Sbjct: 303 NGHAEEALEFFNLMRKEGFRPDGVSFTGALTACSH 337



 Score = 63.5 bits (153), Expect = 2e-08
 Identities = 41/128 (32%), Positives = 57/128 (44%), Gaps = 32/128 (25%)
 Frame = +3

Query: 51  YGQQVHGLATKLGYEAD-IHVGNSLIDMYAKHGNLEFARQLFRNMETRSLVSWNSMIVGL 227
           +G  +H    KLG + + + VG +L+DMY+K G L+ A  +F  M  R+ VSWN+MI G 
Sbjct: 109 FGGSIHAYVRKLGLDTENVMVGTALVDMYSKCGQLDLAWLMFDEMHVRNSVSWNTMIDGC 168

Query: 228 AINGHA-------------------------------EDALEHFCMMQKEGFKPDGVSYT 314
             NG                                 E ALE F  MQ  G +PD V+  
Sbjct: 169 MRNGEVGEAIVLFDQMSERDAISWTSMIGGFVKKGCFEQALEWFREMQLAGVEPDYVTII 228

Query: 315 GALTACSH 338
             L AC++
Sbjct: 229 SVLAACAN 236


>ref|XP_002523876.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223536964|gb|EEF38602.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 384

 Score =  121 bits (303), Expect = 7e-26
 Identities = 57/95 (60%), Positives = 73/95 (76%)
 Frame = +3

Query: 54  GQQVHGLATKLGYEADIHVGNSLIDMYAKHGNLEFARQLFRNMETRSLVSWNSMIVGLAI 233
           G  +H    +  +  ++ +GNSLIDMY++ G +E ARQ+F  M  R+LVSWNS+IVG A 
Sbjct: 248 GLWIHRYVLEKEFRNNVRIGNSLIDMYSRCGCIELARQVFHKMLKRTLVSWNSIIVGFAA 307

Query: 234 NGHAEDALEHFCMMQKEGFKPDGVSYTGALTACSH 338
           NG AE+ALE+F +MQKEGFKPDGVS+TGALTACSH
Sbjct: 308 NGFAEEALEYFGLMQKEGFKPDGVSFTGALTACSH 342



 Score = 63.9 bits (154), Expect = 1e-08
 Identities = 40/127 (31%), Positives = 60/127 (47%), Gaps = 32/127 (25%)
 Frame = +3

Query: 54  GQQVHGLATKLGYEA-DIHVGNSLIDMYAKHGNLEFARQLFRNMETRSLVSWNSMIVGLA 230
           G  +H    KLG +  ++ VG +L+DMYAK G ++ AR +F +++ ++ VSWN+MI G  
Sbjct: 115 GPSIHAYVRKLGLDTCNVMVGTALVDMYAKCGKVQLARLIFDDLKVKNSVSWNTMIDGYM 174

Query: 231 IN-------------------------------GHAEDALEHFCMMQKEGFKPDGVSYTG 317
            N                               GH E ALE F  MQ    +PD V+   
Sbjct: 175 RNGETGSAMELFDEMPEKDAISWTVFIDGFIKKGHFEQALEWFREMQVSKVEPDYVTIIA 234

Query: 318 ALTACSH 338
            L+AC++
Sbjct: 235 VLSACAN 241


>ref|XP_004159118.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g05750, chloroplastic-like [Cucumis sativus]
          Length = 525

 Score =  120 bits (301), Expect = 1e-25
 Identities = 58/95 (61%), Positives = 72/95 (75%)
 Frame = +3

Query: 54  GQQVHGLATKLGYEADIHVGNSLIDMYAKHGNLEFARQLFRNMETRSLVSWNSMIVGLAI 233
           G  VH       ++ +I + NSLIDMY++ G +EFARQ+F  M  R+LVSWNS+IVG A+
Sbjct: 246 GLWVHRFVMPQEFKDNIKISNSLIDMYSRCGCIEFARQVFVKMAKRTLVSWNSIIVGFAV 305

Query: 234 NGHAEDALEHFCMMQKEGFKPDGVSYTGALTACSH 338
           NG A+++LE F  MQKEGFKPDGVSYTGALTACSH
Sbjct: 306 NGFADESLEFFXAMQKEGFKPDGVSYTGALTACSH 340



 Score = 65.9 bits (159), Expect = 3e-09
 Identities = 42/127 (33%), Positives = 58/127 (45%), Gaps = 32/127 (25%)
 Frame = +3

Query: 51  YGQQVHGLATKLGYEAD-IHVGNSLIDMYAK----------------------------- 140
           +   +HG A K G +   + VG +LIDMY+K                             
Sbjct: 112 FASSLHGYACKYGLDTGHVMVGTALIDMYSKCAQLGHARKVFYNLGVKNSVSWNTMLNGF 171

Query: 141 --HGNLEFARQLFRNMETRSLVSWNSMIVGLAINGHAEDALEHFCMMQKEGFKPDGVSYT 314
             +G +E A QLF  M TR  +SW ++I GL  +G++E ALE F  MQ+ G   D VS  
Sbjct: 172 MRNGEIELAIQLFDEMPTRDAISWTALINGLLKHGYSEQALECFHQMQRSGVAADYVSII 231

Query: 315 GALTACS 335
             L AC+
Sbjct: 232 AVLAACA 238


>ref|XP_004139593.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05750,
           chloroplastic-like [Cucumis sativus]
          Length = 525

 Score =  120 bits (300), Expect = 1e-25
 Identities = 58/95 (61%), Positives = 72/95 (75%)
 Frame = +3

Query: 54  GQQVHGLATKLGYEADIHVGNSLIDMYAKHGNLEFARQLFRNMETRSLVSWNSMIVGLAI 233
           G  VH       ++ +I + NSLIDMY++ G +EFARQ+F  M  R+LVSWNS+IVG A+
Sbjct: 246 GLWVHRFVMPQEFKDNIKISNSLIDMYSRCGCIEFARQVFVKMAKRTLVSWNSIIVGFAV 305

Query: 234 NGHAEDALEHFCMMQKEGFKPDGVSYTGALTACSH 338
           NG A+++LE F  MQKEGFKPDGVSYTGALTACSH
Sbjct: 306 NGFADESLEFFYAMQKEGFKPDGVSYTGALTACSH 340



 Score = 65.9 bits (159), Expect = 3e-09
 Identities = 42/127 (33%), Positives = 58/127 (45%), Gaps = 32/127 (25%)
 Frame = +3

Query: 51  YGQQVHGLATKLGYEAD-IHVGNSLIDMYAK----------------------------- 140
           +   +HG A K G +   + VG +LIDMY+K                             
Sbjct: 112 FASSLHGYACKYGLDTGHVMVGTALIDMYSKCAQLGHARKVFYNLGVKNSVSWNTMLNGF 171

Query: 141 --HGNLEFARQLFRNMETRSLVSWNSMIVGLAINGHAEDALEHFCMMQKEGFKPDGVSYT 314
             +G +E A QLF  M TR  +SW ++I GL  +G++E ALE F  MQ+ G   D VS  
Sbjct: 172 MRNGEIELAIQLFDEMPTRDAISWTALINGLLKHGYSEQALECFHQMQRSGVAADYVSII 231

Query: 315 GALTACS 335
             L AC+
Sbjct: 232 AVLAACA 238


>dbj|BAD16914.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group] gi|215704291|dbj|BAG93131.1|
           unnamed protein product [Oryza sativa Japonica Group]
          Length = 527

 Score =  119 bits (299), Expect = 2e-25
 Identities = 55/95 (57%), Positives = 69/95 (72%)
 Frame = +3

Query: 54  GQQVHGLATKLGYEADIHVGNSLIDMYAKHGNLEFARQLFRNMETRSLVSWNSMIVGLAI 233
           G  VH L  + G E ++ + NSLIDMYA+ G +E ARQ+F  M  R++VSWNSMIVG A 
Sbjct: 255 GMWVHRLVVRQGLERNVRIANSLIDMYARCGQVELARQVFSGMRKRTVVSWNSMIVGFAA 314

Query: 234 NGHAEDALEHFCMMQKEGFKPDGVSYTGALTACSH 338
           NG   DA+EHF  M++EGFKPD V++TG LTACSH
Sbjct: 315 NGRCADAVEHFEAMRREGFKPDAVTFTGVLTACSH 349