BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00038052
         (319 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002279168.1| PREDICTED: pentatricopeptide repeat-containi...   176   1e-42
ref|XP_002520332.1| pentatricopeptide repeat-containing protein,...   166   2e-39
ref|XP_004149831.1| PREDICTED: pentatricopeptide repeat-containi...   162   3e-38
emb|CBI15606.3| unnamed protein product [Vitis vinifera]              148   5e-34
ref|XP_003553291.1| PREDICTED: pentatricopeptide repeat-containi...   139   2e-31

>ref|XP_002279168.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g77405-like [Vitis vinifera]
          Length = 432

 Score =  176 bits (447), Expect = 1e-42
 Identities = 84/107 (78%), Positives = 98/107 (91%), Gaps = 1/107 (0%)
 Frame = -2

Query: 318 GCLPNRITYNSFIRYYSAVNEIDKAVEMMRRMKSMNHGIPTTSSYTPVIHALCEAGRVLE 139
           GC+PNR+TYNSFIRYYSAVNEIDKAV+M+ +MK MNHGIPTTSSYTP+IHALCE GR+LE
Sbjct: 305 GCVPNRVTYNSFIRYYSAVNEIDKAVDMLCKMKEMNHGIPTTSSYTPIIHALCETGRILE 364

Query: 138 ARDFLVELVNEGSVPREYTYKLVCNALSAADEAS-LPDELRRRIENG 1
           ARDFL+ELV+ GSVPREYTYK+VC++L +A EA+ L DELR RIENG
Sbjct: 365 ARDFLIELVDGGSVPREYTYKVVCDSLRSAGEANMLGDELRGRIENG 411


>ref|XP_002520332.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223540551|gb|EEF42118.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 441

 Score =  166 bits (419), Expect = 2e-39
 Identities = 78/107 (72%), Positives = 94/107 (87%), Gaps = 1/107 (0%)
 Frame = -2

Query: 318 GCLPNRITYNSFIRYYSAVNEIDKAVEMMRRMKSMNHGIPTTSSYTPVIHALCEAGRVLE 139
           GC+PNR+TYNSFIRYYSAVNEIDKAVEM+RRM++MNHG+ T+SSYTP+IHALCEA RVLE
Sbjct: 314 GCVPNRVTYNSFIRYYSAVNEIDKAVEMLRRMQNMNHGLATSSSYTPIIHALCEADRVLE 373

Query: 138 ARDFLVELVNEGSVPREYTYKLVCNALSAADEASL-PDELRRRIENG 1
           ARDFL+ELV+ GS+PREYTYKLVC  + +A E +L  DE   RI++G
Sbjct: 374 ARDFLLELVDGGSIPREYTYKLVCETMKSAREVNLIDDEFHNRIKDG 420


>ref|XP_004149831.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g77405-like [Cucumis sativus]
           gi|449518241|ref|XP_004166151.1| PREDICTED:
           pentatricopeptide repeat-containing protein
           At1g77405-like [Cucumis sativus]
          Length = 445

 Score =  162 bits (410), Expect = 3e-38
 Identities = 76/107 (71%), Positives = 94/107 (87%), Gaps = 1/107 (0%)
 Frame = -2

Query: 318 GCLPNRITYNSFIRYYSAVNEIDKAVEMMRRMKSMNHGIPTTSSYTPVIHALCEAGRVLE 139
           GC PNR+TYNSFIRYYSAVNEID+A++M+R M+ MNHGI T+SSYTP+IHALCE G+V+E
Sbjct: 319 GCTPNRLTYNSFIRYYSAVNEIDQAIKMLRMMQKMNHGIATSSSYTPIIHALCEGGKVIE 378

Query: 138 ARDFLVELVNEGSVPREYTYKLVCNALSAADEASLPDE-LRRRIENG 1
           ARDFL+EL+ EGSVPREYTY+LVCN L++A +ASL DE +  RI +G
Sbjct: 379 ARDFLLELLEEGSVPREYTYQLVCNLLNSAGKASLLDENVHERIRHG 425


>emb|CBI15606.3| unnamed protein product [Vitis vinifera]
          Length = 381

 Score =  148 bits (373), Expect = 5e-34
 Identities = 72/93 (77%), Positives = 84/93 (90%), Gaps = 1/93 (1%)
 Frame = -2

Query: 276 YYSAVNEIDKAVEMMRRMKSMNHGIPTTSSYTPVIHALCEAGRVLEARDFLVELVNEGSV 97
           YYSAVNEIDKAV+M+ +MK MNHGIPTTSSYTP+IHALCE GR+LEARDFL+ELV+ GSV
Sbjct: 268 YYSAVNEIDKAVDMLCKMKEMNHGIPTTSSYTPIIHALCETGRILEARDFLIELVDGGSV 327

Query: 96  PREYTYKLVCNALSAADEAS-LPDELRRRIENG 1
           PREYTYK+VC++L +A EA+ L DELR RIENG
Sbjct: 328 PREYTYKVVCDSLRSAGEANMLGDELRGRIENG 360


>ref|XP_003553291.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g77405-like [Glycine max]
          Length = 732

 Score =  139 bits (350), Expect = 2e-31
 Identities = 69/109 (63%), Positives = 83/109 (76%), Gaps = 3/109 (2%)
 Frame = -2

Query: 318 GCLPNRITYNSFIRYYSAVNEIDKAVEMMRRMKSMNHGIPTTSSYTPVIHALCEAGRVLE 139
           G +PNR+TY  FIRYY  VNEIDK VEM+R M+ + HG+P +SSYTP+IHALCEAGRV+E
Sbjct: 597 GLVPNRVTYGCFIRYYCVVNEIDKGVEMLREMQRLGHGVPGSSSYTPIIHALCEAGRVVE 656

Query: 138 ARDFLVELVNEGSVPREYTYKLVCNALSAADEASL---PDELRRRIENG 1
           A  FLVELV  GSVPREYTY LVC+ L AA E  L    D + +RI++G
Sbjct: 657 AWWFLVELVEGGSVPREYTYGLVCDRLRAAGEGGLLEDHDGVHKRIKDG 705