BLASTX nr result

ID: Coptis23_contig00037919 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00037919
         (294 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002522353.1| conserved hypothetical protein [Ricinus comm...    82   5e-14
ref|NP_190612.3| uncharacterized protein [Arabidopsis thaliana] ...    56   3e-06
ref|XP_003519917.1| PREDICTED: uncharacterized protein LOC100812...    56   3e-06
emb|CAB62472.1| hypothetical protein [Arabidopsis thaliana]            56   3e-06

>ref|XP_002522353.1| conserved hypothetical protein [Ricinus communis]
           gi|223538431|gb|EEF40037.1| conserved hypothetical
           protein [Ricinus communis]
          Length = 535

 Score = 82.0 bits (201), Expect = 5e-14
 Identities = 38/92 (41%), Positives = 51/92 (55%)
 Frame = +3

Query: 3   LISFDKGAGTKCSCASSNSCLTSKFQYGQDCCAWNKGLSQLSEWINRHVPLDKMVDYEMY 182
           LIS  +    KC+C + N C         DCC   KG  ++ +W+  H P+D  V  EMY
Sbjct: 397 LISLTRDKSKKCTCGTLNCCSGYSIS-DMDCCGRKKGFLEIYKWLQGHFPIDMSVGQEMY 455

Query: 183 IKSCASFTLSLLKLYMDEDDFLFEILLHLSSL 278
            + C  FT S L+LYM EDD LF++LL L S+
Sbjct: 456 FEKCIGFTFSFLQLYMHEDDVLFKVLLQLLSI 487


>ref|NP_190612.3| uncharacterized protein [Arabidopsis thaliana]
           gi|28973649|gb|AAO64145.1| unknown protein [Arabidopsis
           thaliana] gi|110737253|dbj|BAF00574.1| hypothetical
           protein [Arabidopsis thaliana]
           gi|332645145|gb|AEE78666.1| uncharacterized protein
           [Arabidopsis thaliana]
          Length = 642

 Score = 56.2 bits (134), Expect = 3e-06
 Identities = 23/58 (39%), Positives = 39/58 (67%)
 Frame = +3

Query: 108 KGLSQLSEWINRHVPLDKMVDYEMYIKSCASFTLSLLKLYMDEDDFLFEILLHLSSLP 281
           KG++++ +WI R +P +   D+ +Y K    F+ S ++L+M EDD LF++LL L S+P
Sbjct: 423 KGMAEMFKWIERQIPGNMFSDHRIYSKKNVEFSASFVRLFMHEDDLLFKVLLQLLSVP 480


>ref|XP_003519917.1| PREDICTED: uncharacterized protein LOC100812484 [Glycine max]
          Length = 639

 Score = 56.2 bits (134), Expect = 3e-06
 Identities = 33/84 (39%), Positives = 47/84 (55%), Gaps = 5/84 (5%)
 Frame = +3

Query: 51  SNSCLTSKFQYGQDC-----CAWNKGLSQLSEWINRHVPLDKMVDYEMYIKSCASFTLSL 215
           +NS L S F    D      C   KG  +L +WI  H+P    +++E Y++ C +F  S 
Sbjct: 418 NNSTLCSSFTTNPDSEHDYFCR-KKGSLELFKWILGHLPTAISINHEKYMQMCMNFISSF 476

Query: 216 LKLYMDEDDFLFEILLHLSSLPFS 287
           L+LY+ EDD LFE+LL L S+  S
Sbjct: 477 LQLYLREDDLLFEVLLLLFSISSS 500


>emb|CAB62472.1| hypothetical protein [Arabidopsis thaliana]
          Length = 730

 Score = 56.2 bits (134), Expect = 3e-06
 Identities = 23/58 (39%), Positives = 39/58 (67%)
 Frame = +3

Query: 108 KGLSQLSEWINRHVPLDKMVDYEMYIKSCASFTLSLLKLYMDEDDFLFEILLHLSSLP 281
           KG++++ +WI R +P +   D+ +Y K    F+ S ++L+M EDD LF++LL L S+P
Sbjct: 416 KGMAEMFKWIERQIPGNMFSDHRIYSKKNVEFSASFVRLFMHEDDLLFKVLLQLLSVP 473


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