BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00037853
         (880 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002331075.1| predicted protein [Populus trichocarpa] gi|2...   130   3e-28
dbj|BAF01687.1| hypothetical protein [Arabidopsis thaliana]           123   2e-26
dbj|BAA97290.1| non-LTR retroelement reverse transcriptase-like ...   123   2e-26
gb|AAF99785.1|AC012463_2 T2E6.4 [Arabidopsis thaliana]                110   6e-22
dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like ...   108   1e-21

>ref|XP_002331075.1| predicted protein [Populus trichocarpa] gi|222873039|gb|EEF10170.1|
           predicted protein [Populus trichocarpa]
          Length = 517

 Score =  130 bits (328), Expect = 3e-28
 Identities = 72/220 (32%), Positives = 114/220 (51%), Gaps = 4/220 (1%)
 Frame = -3

Query: 878 LTKKEGGLGIKNLGQWNKAGYCGLIFKIVS-KEKSLWVSWAWNHHINNKSFWTMPCPREC 702
           L KKEGGLGIK++ +WNK      I+ + +  + S+W +W  ++ +  ++FWT+  P+ C
Sbjct: 154 LPKKEGGLGIKSIKEWNKIALLKHIWNLCNDSDGSIWSTWIRSNLLRGRNFWTIKTPQNC 213

Query: 701 SWVWRNILELRTTACKFIKYSIASGNETSLWYDLWCSTRSLIEDHNARNYIQPPL--EAK 528
           SW W  IL+LR+ A   +KY I  G  TSLW+D W     L + +  R      +   AK
Sbjct: 214 SWAWGKILKLRSLAWPKMKYIIGDGMTTSLWFDNWHPHSPLADSYGERFIYDSGMAKNAK 273

Query: 527 VSELISSAEWNS-RVHNLRCSELRE*ILDTDINRFIEKD*VMWTPDPKGIYSSVSAYNAL 351
           V+ LI ++EW +     +    + E I      +  +KD ++W   P   +S   A+  L
Sbjct: 274 VNVLIQNSEWKTPTTQAIGWHPIIEAIPSNSNPKMGQKDELVWLDSPNHRFSVKVAWEQL 333

Query: 350 RAPRERVRWYNMVWGTMVMPKHSFTA*QLFAGNLPTHDRL 231
           R  R+ V W+++VW    +P+HSF         L T D+L
Sbjct: 334 RRHRQMVEWHDIVWFKNAVPRHSFLLWMAVQQKLTTQDKL 373


>dbj|BAF01687.1| hypothetical protein [Arabidopsis thaliana]
          Length = 1072

 Score =  123 bits (308), Expect(2) = 2e-26
 Identities = 73/241 (30%), Positives = 112/241 (46%), Gaps = 7/241 (2%)
 Frame = -3

Query: 878  LTKKEGGLGIKNLGQWNKAGYCGLIFKIVSKEKSLWVSWAWNHHINNKSFWTMPCPRECS 699
            L K EGGLG ++ G+WNK     LI+ +  ++ SLW  W  +H + + SFW +   +   
Sbjct: 720  LPKSEGGLGFRSFGEWNKTLLLRLIWVLFDRDTSLWAQWQRHHRLGHASFWQVNALQTDP 779

Query: 698  WVWRNILELRTTACKFIKYSIASGNETSLWYDLWCSTRSLIE---DHNARNYIQPPLEAK 528
            W W+ +L LR  A KFIK  + +G   S W+D W S   LI+   D  +R  ++ P  AK
Sbjct: 780  WTWKMLLNLRPLAEKFIKAKVGNGGTVSFWFDCWTSLGPLIKYLGDVGSRP-LRIPFSAK 838

Query: 527  VSELISSAEWNSRV-HNLRCSELRE*ILD-TDINRFIEKD*VMWTPDPKGI--YSSVSAY 360
            V++ I  + W   +  +L    +   +      +  +  D   W  D      +S+   +
Sbjct: 839  VADAIDGSGWRLPLSRSLTADSILSHLASLPPPSPLMVSDSYSWCVDDVDCQGFSAAKTW 898

Query: 359  NALRAPRERVRWYNMVWGTMVMPKHSFTA*QLFAGNLPTHDRLVKKKVLQSTSCCTVAYV 180
              LR  R   RW   VW    +PKH+F         LPT  RLV   ++ S  CC  ++ 
Sbjct: 899  EVLRPRRPVKRWARSVWFKGAVPKHAFNFWTAQLNRLPTRQRLVSWGLVSSAECCLCSFD 958

Query: 179  T 177
            T
Sbjct: 959  T 959



 Score = 22.7 bits (47), Expect(2) = 2e-26
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = -2

Query: 192 CCLCNQSRENSKHLL 148
           CCLC+   E   HLL
Sbjct: 952 CCLCSFDTETRDHLL 966


>dbj|BAA97290.1| non-LTR retroelement reverse transcriptase-like [Arabidopsis
            thaliana]
          Length = 1072

 Score =  123 bits (308), Expect(2) = 2e-26
 Identities = 73/241 (30%), Positives = 112/241 (46%), Gaps = 7/241 (2%)
 Frame = -3

Query: 878  LTKKEGGLGIKNLGQWNKAGYCGLIFKIVSKEKSLWVSWAWNHHINNKSFWTMPCPRECS 699
            L K EGGLG ++ G+WNK     LI+ +  ++ SLW  W  +H + + SFW +   +   
Sbjct: 720  LPKSEGGLGFRSFGEWNKTLLLRLIWVLFDRDTSLWAQWQRHHRLGHASFWQVNALQTDP 779

Query: 698  WVWRNILELRTTACKFIKYSIASGNETSLWYDLWCSTRSLIE---DHNARNYIQPPLEAK 528
            W W+ +L LR  A KFIK  + +G   S W+D W S   LI+   D  +R  ++ P  AK
Sbjct: 780  WTWKMLLNLRPLAEKFIKAKVGNGGTVSFWFDCWTSLGPLIKYLGDVGSRP-LRIPFSAK 838

Query: 527  VSELISSAEWNSRV-HNLRCSELRE*ILD-TDINRFIEKD*VMWTPDPKGI--YSSVSAY 360
            V++ I  + W   +  +L    +   +      +  +  D   W  D      +S+   +
Sbjct: 839  VADAIDGSGWRLPLSRSLTADSILSHLASLPPPSPLMVSDSYSWCVDDVDCQGFSAAKTW 898

Query: 359  NALRAPRERVRWYNMVWGTMVMPKHSFTA*QLFAGNLPTHDRLVKKKVLQSTSCCTVAYV 180
              LR  R   RW   VW    +PKH+F         LPT  RLV   ++ S  CC  ++ 
Sbjct: 899  EVLRPRRPVKRWAKSVWFKGAVPKHAFNFWTAQLNRLPTRQRLVSWGLVSSAECCLCSFD 958

Query: 179  T 177
            T
Sbjct: 959  T 959



 Score = 22.7 bits (47), Expect(2) = 2e-26
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = -2

Query: 192 CCLCNQSRENSKHLL 148
           CCLC+   E   HLL
Sbjct: 952 CCLCSFDTETRDHLL 966


>gb|AAF99785.1|AC012463_2 T2E6.4 [Arabidopsis thaliana]
          Length = 740

 Score =  110 bits (274), Expect = 6e-22
 Identities = 75/232 (32%), Positives = 112/232 (48%), Gaps = 9/232 (3%)
 Frame = -3

Query: 872  KKEGGLGIKNLGQWNKAGYCGLIFKIVSKEKSLWVSWAWNHHINNKSFWTMPCPREC-SW 696
            K+EGGLGIK+L + NK     LI+++VS++ SLWV+W W + I   SFW+        SW
Sbjct: 442  KQEGGLGIKSLLEANKVSCLKLIWRLVSRQSSLWVNWVWTYIIRKGSFWSANDRSSLGSW 501

Query: 695  VWRNILELRTTACKFIKYSIASGNETSLWYDLWCSTRSLIEDHNARNYIQP--PLEAKVS 522
            +W+ +L+ R  A    K  I SG+ TS WYD W     L++  NAR  I    PL A V+
Sbjct: 502  MWKKLLKYRDVAKSMCKVEIKSGSSTSFWYDNWSQLGQLVDVTNARRTIDMGIPLAATVA 561

Query: 521  ELISS---AEWNSRVHNLRCSELRE*ILDTDINRFIEKD*VMWTPDPKGIYSSV---SAY 360
             +++S       + ++N   +E++  IL  +  R    D  +W         S      +
Sbjct: 562  TVLASHRTKHHRTAIYNKIEAEIQS-ILQRE--RSGAPDIFLWRSSGDNFRQSFITKVTW 618

Query: 359  NALRAPRERVRWYNMVWGTMVMPKHSFTA*QLFAGNLPTHDRLVKKKVLQST 204
            + +R      +WY  VW +   PK+SF         L T DR+ K    Q T
Sbjct: 619  HNIRVIHTHRQWYKGVWFSYNTPKYSFLLWLAIHDRLSTGDRIKKWNSGQQT 670


>dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like protein [Arabidopsis
            thaliana]
          Length = 1223

 Score =  108 bits (271), Expect = 1e-21
 Identities = 67/230 (29%), Positives = 108/230 (46%), Gaps = 5/230 (2%)
 Frame = -3

Query: 872  KKEGGLGIKNLGQWNKAGYCGLIFKIVSKEKSLWVSWAWNHHINNKSFWTM-PCPRECSW 696
            K EGGLG+++L + N      L++KIVS   SLWV W   H + N SFW +     + SW
Sbjct: 869  KDEGGLGLRSLKEANDVCCLKLVWKIVSHSNSLWVKWVDQHLLRNASFWEVKQTVSQGSW 928

Query: 695  VWRNILELRTTACKFIKYSIASGNETSLWYDLWCSTRSLIEDHNARNYIQPPLEAKVSEL 516
            +W+ +L+ R  A    K  + +G +TS WYD W     L+E    R  I   +  +++  
Sbjct: 929  IWKKLLKYREVAKTLSKVEVGNGKQTSFWYDNWSDLGQLLERTGDRGLIDLGISRRMTVE 988

Query: 515  ISSAEWNSRVHNLRCSELRE*ILDTDINRFIE-KD*VMWTPDP---KGIYSSVSAYNALR 348
             +      R H      + E  L    +   E +D V+W       +  +S+   ++  R
Sbjct: 989  EAWTNRRQRRHRNDVYNVIEDALKKSWDTRTETEDKVLWRGKSDVFRTTFSTRDTWHHTR 1048

Query: 347  APRERVRWYNMVWGTMVMPKHSFTA*QLFAGNLPTHDRLVKKKVLQSTSC 198
            +   RV W+ ++W +   PK+SF +     G LPT DR++      +T C
Sbjct: 1049 STSARVPWHKVIWFSHATPKYSFCSWLAAHGRLPTGDRMINWANGIATDC 1098