BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00037741
         (576 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002280513.1| PREDICTED: pentatricopeptide repeat-containi...   132   4e-29
ref|XP_002332354.1| predicted protein [Populus trichocarpa] gi|2...   126   2e-27
ref|XP_002514235.1| pentatricopeptide repeat-containing protein,...   125   4e-27
ref|NP_177842.1| pentatricopeptide repeat-containing protein [Ar...   120   2e-25
ref|XP_002889127.1| pentatricopeptide repeat-containing protein ...   120   2e-25

>ref|XP_002280513.1| PREDICTED: pentatricopeptide repeat-containing protein At1g77170
           [Vitis vinifera] gi|297738768|emb|CBI28013.3| unnamed
           protein product [Vitis vinifera]
          Length = 479

 Score =  132 bits (332), Expect = 4e-29
 Identities = 82/195 (42%), Positives = 105/195 (53%), Gaps = 7/195 (3%)
 Frame = +1

Query: 10  MIKFHPRLLILFRAQSSKCLTSLPSSPTFIQPNGFSNTQHQTQIEMNFNANSAHIS---- 177
           M  F P LL L   Q  K     P + +    N  + T H    + NF   +   S    
Sbjct: 1   MTSFQPPLLRLSIVQIPK-----PQTISRHLCNYLATTTHSVDAQFNFQPTAHPPSPDPI 55

Query: 178 ---AQLIATHLSNCTSLHTLNQIHTKIIRTSGVKLRENAFFWNNIIRSYVRFDSPSLALG 348
              AQ IA+HLS C +L  LNQ+   IIRT  ++L    F WNNIIRSY R ++   AL 
Sbjct: 56  QDTAQTIASHLSKCANLIELNQLLAHIIRTHFLELYPAPFQWNNIIRSYTRLEAHHYALS 115

Query: 349 VYLLMARNNVHPDFYTIPIVLKAXXXXXXXXXXXXXXXXALKLGLDLFEFCESGFINFYA 528
           +Y+ M+R  V PD YTIPIVLKA                A++ GL+L E+CESGFI+ Y+
Sbjct: 116 IYIAMSRAGVSPDSYTIPIVLKAVCQAFATGFGRQVHSVAIRHGLELNEYCESGFISVYS 175

Query: 529 KAGDFGNARKVFEQS 573
           KAG+F NA KVFEQ+
Sbjct: 176 KAGEFQNAHKVFEQN 190


>ref|XP_002332354.1| predicted protein [Populus trichocarpa] gi|222832075|gb|EEE70552.1|
           predicted protein [Populus trichocarpa]
          Length = 254

 Score =  126 bits (317), Expect = 2e-27
 Identities = 62/132 (46%), Positives = 86/132 (65%)
 Frame = +1

Query: 178 AQLIATHLSNCTSLHTLNQIHTKIIRTSGVKLRENAFFWNNIIRSYVRFDSPSLALGVYL 357
           ++ IAT LSNCTSL  LNQ +  +IRT  + +    F WNN+IR Y R  +P+ AL +Y+
Sbjct: 6   SKTIATQLSNCTSLQELNQTYAHVIRTHVLDVYTAPFHWNNLIRCYTRLGAPNKALQIYV 65

Query: 358 LMARNNVHPDFYTIPIVLKAXXXXXXXXXXXXXXXXALKLGLDLFEFCESGFINFYAKAG 537
            M+   + PD YT+PIVLKA                A++LGL+L E+CESGFI+ Y+K+G
Sbjct: 66  SMSHAGISPDNYTLPIVLKAACQCFSMELGRQLHSIAIRLGLELNEYCESGFISLYSKSG 125

Query: 538 DFGNARKVFEQS 573
           DFG+A KVFE++
Sbjct: 126 DFGDAYKVFEEN 137


>ref|XP_002514235.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223546691|gb|EEF48189.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 352

 Score =  125 bits (315), Expect = 4e-27
 Identities = 67/138 (48%), Positives = 86/138 (62%)
 Frame = +1

Query: 163 SAHISAQLIATHLSNCTSLHTLNQIHTKIIRTSGVKLRENAFFWNNIIRSYVRFDSPSLA 342
           SA   A+  AT  SNCT+L  LNQI+  II +  +      F WNNIIRSY R D+P  A
Sbjct: 48  SAQDIAKWAATQSSNCTTLRDLNQIYAHIICSDLLHFYSAPFHWNNIIRSYTRLDAPVKA 107

Query: 343 LGVYLLMARNNVHPDFYTIPIVLKAXXXXXXXXXXXXXXXXALKLGLDLFEFCESGFINF 522
           L VY+ M+R  V PD YT+PIVLKA                A++LGL+  E+CESGFI+F
Sbjct: 108 LQVYISMSRAGVLPDSYTLPIVLKAACQIFSIEIGKQLQSVAIRLGLESNEYCESGFISF 167

Query: 523 YAKAGDFGNARKVFEQSP 576
           Y+K+GD  NA K+FE++P
Sbjct: 168 YSKSGDIKNAYKMFEENP 185


>ref|NP_177842.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|122215262|sp|Q3ECB8.1|PP128_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At1g77170 gi|332197823|gb|AEE35944.1| pentatricopeptide
           repeat-containing protein [Arabidopsis thaliana]
          Length = 467

 Score =  120 bits (301), Expect = 2e-25
 Identities = 64/132 (48%), Positives = 84/132 (63%)
 Frame = +1

Query: 181 QLIATHLSNCTSLHTLNQIHTKIIRTSGVKLRENAFFWNNIIRSYVRFDSPSLALGVYLL 360
           +L+AT LSNCTSL  + +IH  I R+  +     AF WNNI+RSY+R +SP  A+ VYL 
Sbjct: 48  KLLATLLSNCTSLARVRRIHGDIFRSRILDQYPIAFLWNNIMRSYIRHESPLDAIQVYLG 107

Query: 361 MARNNVHPDFYTIPIVLKAXXXXXXXXXXXXXXXXALKLGLDLFEFCESGFINFYAKAGD 540
           M R+ V PD Y++PIV+KA                A++LG    EFCESGFI  Y KAG+
Sbjct: 108 MVRSTVLPDRYSLPIVIKAAVQIHDFTLGKELHSVAVRLGFVGDEFCESGFITLYCKAGE 167

Query: 541 FGNARKVFEQSP 576
           F NARKVF+++P
Sbjct: 168 FENARKVFDENP 179


>ref|XP_002889127.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata] gi|297334968|gb|EFH65386.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           lyrata subsp. lyrata]
          Length = 466

 Score =  120 bits (300), Expect = 2e-25
 Identities = 64/132 (48%), Positives = 83/132 (62%)
 Frame = +1

Query: 181 QLIATHLSNCTSLHTLNQIHTKIIRTSGVKLRENAFFWNNIIRSYVRFDSPSLALGVYLL 360
           +L+AT LSNCTSL  + +IH  I R+  +     AF WNNI+RSY+R DSP  ++ VYL 
Sbjct: 47  KLLATLLSNCTSLARVRRIHGDIFRSCILDQYPIAFLWNNIMRSYIRHDSPLDSVQVYLG 106

Query: 361 MARNNVHPDFYTIPIVLKAXXXXXXXXXXXXXXXXALKLGLDLFEFCESGFINFYAKAGD 540
           M R+NV PD YT+PIV+KA                A++LG    EFCESGFI  Y KAG+
Sbjct: 107 MVRSNVLPDRYTLPIVIKAAVQIHDFPLGKQLHSVAVRLGFVGDEFCESGFITLYCKAGE 166

Query: 541 FGNARKVFEQSP 576
             NAR VF+++P
Sbjct: 167 LENARNVFDENP 178