BLASTX nr result
ID: Coptis23_contig00037673
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis23_contig00037673
(319 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_004154991.1| PREDICTED: LOW QUALITY PROTEIN: pentatricope... 191 4e-47
ref|XP_004138146.1| PREDICTED: pentatricopeptide repeat-containi... 191 4e-47
ref|NP_177613.1| pentatricopeptide repeat-containing protein [Ar... 191 7e-47
ref|XP_002887557.1| pentatricopeptide repeat-containing protein ... 189 2e-46
gb|AAF79278.1|AC068602_1 F14D16.2 [Arabidopsis thaliana] 189 3e-46
>ref|XP_004154991.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At1g18900-like [Cucumis sativus]
Length = 874
Score = 191 bits (486), Expect = 4e-47
Identities = 88/106 (83%), Positives = 99/106 (93%)
Frame = +1
Query: 1 HSYGRANYLDEAVNVFYQMQEEGCEPDRVTYCTLIDIHAKSGFLDVALDMYGRMQEAGLT 180
HSYGRANYL +AVNVF QMQE GCEPDRVTYCTLIDIHAKSGFLDVA+ MY +MQ+AGLT
Sbjct: 422 HSYGRANYLQDAVNVFKQMQEAGCEPDRVTYCTLIDIHAKSGFLDVAMGMYEKMQDAGLT 481
Query: 181 PDTFTYSVIINCLGKAGHLDASYKLFSEMIDQGCVPNLVTYNIMIA 318
PDTFTYSV+INCLGKAGHL+A+++LF M+D+GCVPNLVTYNIMIA
Sbjct: 482 PDTFTYSVMINCLGKAGHLNAAHRLFCRMVDEGCVPNLVTYNIMIA 527
Score = 76.6 bits (187), Expect = 2e-12
Identities = 36/102 (35%), Positives = 62/102 (60%)
Frame = +1
Query: 10 GRANYLDEAVNVFYQMQEEGCEPDRVTYCTLIDIHAKSGFLDVALDMYGRMQEAGLTPDT 189
G+A +L+ A +F +M +EGC P+ VTY +I + AK+ ++AL +Y MQ++G PD
Sbjct: 495 GKAGHLNAAHRLFCRMVDEGCVPNLVTYNIMIALQAKARNYEIALKLYRDMQQSGFEPDK 554
Query: 190 FTYSVIINCLGKAGHLDASYKLFSEMIDQGCVPNLVTYNIMI 315
TY +++ LG G L+ + +F EM + VP+ Y +++
Sbjct: 555 VTYCIVMEVLGHCGFLEEAEGIFIEMQKKNWVPDEPVYGLLV 596
Score = 69.3 bits (168), Expect = 3e-10
Identities = 30/102 (29%), Positives = 61/102 (59%)
Frame = +1
Query: 13 RANYLDEAVNVFYQMQEEGCEPDRVTYCTLIDIHAKSGFLDVALDMYGRMQEAGLTPDTF 192
+A + A+ ++ MQ+ G EPD+VTYC ++++ GFL+ A ++ MQ+ PD
Sbjct: 531 KARNYEIALKLYRDMQQSGFEPDKVTYCIVMEVLGHCGFLEEAEGIFIEMQKKNWVPDEP 590
Query: 193 TYSVIINCLGKAGHLDASYKLFSEMIDQGCVPNLVTYNIMIA 318
Y ++++ GK+G++ +++ + M+ G PN+ T N +++
Sbjct: 591 VYGLLVDLWGKSGNVQKAWEWYHAMLKAGLKPNVPTCNSLLS 632
Score = 65.9 bits (159), Expect = 3e-09
Identities = 32/103 (31%), Positives = 57/103 (55%)
Frame = +1
Query: 10 GRANYLDEAVNVFYQMQEEGCEPDRVTYCTLIDIHAKSGFLDVALDMYGRMQEAGLTPDT 189
G +L+EA +F +MQ++ PD Y L+D+ KSG + A + Y M +AGL P+
Sbjct: 565 GHCGFLEEAEGIFIEMQKKNWVPDEPVYGLLVDLWGKSGNVQKAWEWYHAMLKAGLKPNV 624
Query: 190 FTYSVIINCLGKAGHLDASYKLFSEMIDQGCVPNLVTYNIMIA 318
T + +++ + L +Y+L M+ G P+L TY ++++
Sbjct: 625 PTCNSLLSAFLRVHQLSDAYQLLQSMLTFGLKPSLQTYTLLLS 667
>ref|XP_004138146.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g18900-like [Cucumis sativus]
Length = 874
Score = 191 bits (486), Expect = 4e-47
Identities = 88/106 (83%), Positives = 99/106 (93%)
Frame = +1
Query: 1 HSYGRANYLDEAVNVFYQMQEEGCEPDRVTYCTLIDIHAKSGFLDVALDMYGRMQEAGLT 180
HSYGRANYL +AVNVF QMQE GCEPDRVTYCTLIDIHAKSGFLDVA+ MY +MQ+AGLT
Sbjct: 422 HSYGRANYLQDAVNVFKQMQEAGCEPDRVTYCTLIDIHAKSGFLDVAMGMYEKMQDAGLT 481
Query: 181 PDTFTYSVIINCLGKAGHLDASYKLFSEMIDQGCVPNLVTYNIMIA 318
PDTFTYSV+INCLGKAGHL+A+++LF M+D+GCVPNLVTYNIMIA
Sbjct: 482 PDTFTYSVMINCLGKAGHLNAAHRLFCRMVDEGCVPNLVTYNIMIA 527
Score = 76.6 bits (187), Expect = 2e-12
Identities = 36/102 (35%), Positives = 62/102 (60%)
Frame = +1
Query: 10 GRANYLDEAVNVFYQMQEEGCEPDRVTYCTLIDIHAKSGFLDVALDMYGRMQEAGLTPDT 189
G+A +L+ A +F +M +EGC P+ VTY +I + AK+ ++AL +Y MQ++G PD
Sbjct: 495 GKAGHLNAAHRLFCRMVDEGCVPNLVTYNIMIALQAKARNYEIALKLYRDMQQSGFEPDK 554
Query: 190 FTYSVIINCLGKAGHLDASYKLFSEMIDQGCVPNLVTYNIMI 315
TY +++ LG G L+ + +F EM + VP+ Y +++
Sbjct: 555 VTYCIVMEVLGHCGFLEEAEGIFIEMQKKNWVPDEPVYGLLV 596
Score = 69.3 bits (168), Expect = 3e-10
Identities = 30/102 (29%), Positives = 61/102 (59%)
Frame = +1
Query: 13 RANYLDEAVNVFYQMQEEGCEPDRVTYCTLIDIHAKSGFLDVALDMYGRMQEAGLTPDTF 192
+A + A+ ++ MQ+ G EPD+VTYC ++++ GFL+ A ++ MQ+ PD
Sbjct: 531 KARNYEIALKLYRDMQQSGFEPDKVTYCIVMEVLGHCGFLEEAEGIFIEMQKKNWVPDEP 590
Query: 193 TYSVIINCLGKAGHLDASYKLFSEMIDQGCVPNLVTYNIMIA 318
Y ++++ GK+G++ +++ + M+ G PN+ T N +++
Sbjct: 591 VYGLLVDLWGKSGNVQKAWEWYHAMLKAGLKPNVPTCNSLLS 632
Score = 65.9 bits (159), Expect = 3e-09
Identities = 32/103 (31%), Positives = 57/103 (55%)
Frame = +1
Query: 10 GRANYLDEAVNVFYQMQEEGCEPDRVTYCTLIDIHAKSGFLDVALDMYGRMQEAGLTPDT 189
G +L+EA +F +MQ++ PD Y L+D+ KSG + A + Y M +AGL P+
Sbjct: 565 GHCGFLEEAEGIFIEMQKKNWVPDEPVYGLLVDLWGKSGNVQKAWEWYHAMLKAGLKPNV 624
Query: 190 FTYSVIINCLGKAGHLDASYKLFSEMIDQGCVPNLVTYNIMIA 318
T + +++ + L +Y+L M+ G P+L TY ++++
Sbjct: 625 PTCNSLLSAFLRVHQLSDAYQLLQSMLTFGLKPSLQTYTLLLS 667
>ref|NP_177613.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75207514|sp|Q9SSF9.1|PP123_ARATH RecName:
Full=Pentatricopeptide repeat-containing protein
At1g74750 gi|5882748|gb|AAD55301.1|AC008263_32 Contains
2 PF|01535 DUF domains [Arabidopsis thaliana]
gi|332197508|gb|AEE35629.1| pentatricopeptide
repeat-containing protein [Arabidopsis thaliana]
Length = 855
Score = 191 bits (484), Expect = 7e-47
Identities = 88/106 (83%), Positives = 98/106 (92%)
Frame = +1
Query: 1 HSYGRANYLDEAVNVFYQMQEEGCEPDRVTYCTLIDIHAKSGFLDVALDMYGRMQEAGLT 180
HSYGRANYL EA+NVF QMQE GCEPDRVTYCTLIDIHAK+GFLD+A+DMY RMQEAGL+
Sbjct: 402 HSYGRANYLKEAMNVFNQMQEAGCEPDRVTYCTLIDIHAKAGFLDIAMDMYQRMQEAGLS 461
Query: 181 PDTFTYSVIINCLGKAGHLDASYKLFSEMIDQGCVPNLVTYNIMIA 318
PDTFTYSVIINCLGKAGHL A+++LF EM+ QGC PNLVT+NIMIA
Sbjct: 462 PDTFTYSVIINCLGKAGHLPAAHRLFCEMVGQGCTPNLVTFNIMIA 507
Score = 77.0 bits (188), Expect = 1e-12
Identities = 37/102 (36%), Positives = 61/102 (59%)
Frame = +1
Query: 10 GRANYLDEAVNVFYQMQEEGCEPDRVTYCTLIDIHAKSGFLDVALDMYGRMQEAGLTPDT 189
G+A +L A +F +M +GC P+ VT+ +I +HAK+ + AL +Y MQ AG PD
Sbjct: 475 GKAGHLPAAHRLFCEMVGQGCTPNLVTFNIMIALHAKARNYETALKLYRDMQNAGFQPDK 534
Query: 190 FTYSVIINCLGKAGHLDASYKLFSEMIDQGCVPNLVTYNIMI 315
TYS+++ LG G L+ + +F+EM + VP+ Y +++
Sbjct: 535 VTYSIVMEVLGHCGFLEEAEGVFAEMQRKNWVPDEPVYGLLV 576
Score = 69.7 bits (169), Expect = 2e-10
Identities = 30/104 (28%), Positives = 60/104 (57%)
Frame = +1
Query: 7 YGRANYLDEAVNVFYQMQEEGCEPDRVTYCTLIDIHAKSGFLDVALDMYGRMQEAGLTPD 186
+ +A + A+ ++ MQ G +PD+VTY ++++ GFL+ A ++ MQ PD
Sbjct: 509 HAKARNYETALKLYRDMQNAGFQPDKVTYSIVMEVLGHCGFLEEAEGVFAEMQRKNWVPD 568
Query: 187 TFTYSVIINCLGKAGHLDASYKLFSEMIDQGCVPNLVTYNIMIA 318
Y ++++ GKAG++D +++ + M+ G PN+ T N +++
Sbjct: 569 EPVYGLLVDLWGKAGNVDKAWQWYQAMLQAGLRPNVPTCNSLLS 612
Score = 64.7 bits (156), Expect = 8e-09
Identities = 32/103 (31%), Positives = 55/103 (53%)
Frame = +1
Query: 10 GRANYLDEAVNVFYQMQEEGCEPDRVTYCTLIDIHAKSGFLDVALDMYGRMQEAGLTPDT 189
G +L+EA VF +MQ + PD Y L+D+ K+G +D A Y M +AGL P+
Sbjct: 545 GHCGFLEEAEGVFAEMQRKNWVPDEPVYGLLVDLWGKAGNVDKAWQWYQAMLQAGLRPNV 604
Query: 190 FTYSVIINCLGKAGHLDASYKLFSEMIDQGCVPNLVTYNIMIA 318
T + +++ + + +Y L M+ G P+L TY ++++
Sbjct: 605 PTCNSLLSTFLRVHRMSEAYNLLQSMLALGLHPSLQTYTLLLS 647
>ref|XP_002887557.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata] gi|297333398|gb|EFH63816.1|
pentatricopeptide repeat-containing protein [Arabidopsis
lyrata subsp. lyrata]
Length = 845
Score = 189 bits (480), Expect = 2e-46
Identities = 87/106 (82%), Positives = 98/106 (92%)
Frame = +1
Query: 1 HSYGRANYLDEAVNVFYQMQEEGCEPDRVTYCTLIDIHAKSGFLDVALDMYGRMQEAGLT 180
HSYGRANYL+EA+NVF QMQE GCEPDRVTYCTLIDIHAK+GFLD+A+DMY RMQ AGL+
Sbjct: 392 HSYGRANYLNEAMNVFKQMQEAGCEPDRVTYCTLIDIHAKAGFLDIAMDMYQRMQAAGLS 451
Query: 181 PDTFTYSVIINCLGKAGHLDASYKLFSEMIDQGCVPNLVTYNIMIA 318
PDTFTYSVIINCLGKAGHL A+++LF EM+ QGC PNLVT+NIMIA
Sbjct: 452 PDTFTYSVIINCLGKAGHLPAAHRLFCEMVGQGCTPNLVTFNIMIA 497
Score = 77.0 bits (188), Expect = 1e-12
Identities = 37/102 (36%), Positives = 61/102 (59%)
Frame = +1
Query: 10 GRANYLDEAVNVFYQMQEEGCEPDRVTYCTLIDIHAKSGFLDVALDMYGRMQEAGLTPDT 189
G+A +L A +F +M +GC P+ VT+ +I +HAK+ + AL +Y MQ AG PD
Sbjct: 465 GKAGHLPAAHRLFCEMVGQGCTPNLVTFNIMIALHAKARNYETALKLYRDMQNAGFQPDK 524
Query: 190 FTYSVIINCLGKAGHLDASYKLFSEMIDQGCVPNLVTYNIMI 315
TYS+++ LG G L+ + +F+EM + VP+ Y +++
Sbjct: 525 VTYSIVMEVLGHCGFLEEAEGVFAEMQRKNWVPDEPVYGLLV 566
Score = 70.1 bits (170), Expect = 2e-10
Identities = 30/104 (28%), Positives = 61/104 (58%)
Frame = +1
Query: 7 YGRANYLDEAVNVFYQMQEEGCEPDRVTYCTLIDIHAKSGFLDVALDMYGRMQEAGLTPD 186
+ +A + A+ ++ MQ G +PD+VTY ++++ GFL+ A ++ MQ PD
Sbjct: 499 HAKARNYETALKLYRDMQNAGFQPDKVTYSIVMEVLGHCGFLEEAEGVFAEMQRKNWVPD 558
Query: 187 TFTYSVIINCLGKAGHLDASYKLFSEMIDQGCVPNLVTYNIMIA 318
Y ++++ GKAG+++ +++ + EM+ G PN+ T N +++
Sbjct: 559 EPVYGLLVDLWGKAGNVEKAWQWYQEMLHAGLRPNVPTCNSLLS 602
Score = 62.8 bits (151), Expect = 3e-08
Identities = 31/103 (30%), Positives = 54/103 (52%)
Frame = +1
Query: 10 GRANYLDEAVNVFYQMQEEGCEPDRVTYCTLIDIHAKSGFLDVALDMYGRMQEAGLTPDT 189
G +L+EA VF +MQ + PD Y L+D+ K+G ++ A Y M AGL P+
Sbjct: 535 GHCGFLEEAEGVFAEMQRKNWVPDEPVYGLLVDLWGKAGNVEKAWQWYQEMLHAGLRPNV 594
Query: 190 FTYSVIINCLGKAGHLDASYKLFSEMIDQGCVPNLVTYNIMIA 318
T + +++ + + +Y L M+ G P+L TY ++++
Sbjct: 595 PTCNSLLSTFLRVHRMSEAYNLLQSMLALGLHPSLQTYTLLLS 637
>gb|AAF79278.1|AC068602_1 F14D16.2 [Arabidopsis thaliana]
Length = 977
Score = 189 bits (479), Expect = 3e-46
Identities = 86/105 (81%), Positives = 97/105 (92%)
Frame = +1
Query: 1 HSYGRANYLDEAVNVFYQMQEEGCEPDRVTYCTLIDIHAKSGFLDVALDMYGRMQEAGLT 180
HSYGRANYL+EA+NVF QMQE GC+PDRVTYCTLIDIHAK+GFLD+A+DMY RMQ GL+
Sbjct: 524 HSYGRANYLNEAMNVFNQMQEAGCKPDRVTYCTLIDIHAKAGFLDIAMDMYQRMQAGGLS 583
Query: 181 PDTFTYSVIINCLGKAGHLDASYKLFSEMIDQGCVPNLVTYNIMI 315
PDTFTYSVIINCLGKAGHL A++KLF EM+DQGC PNLVTYNIM+
Sbjct: 584 PDTFTYSVIINCLGKAGHLPAAHKLFCEMVDQGCTPNLVTYNIMM 628
Score = 82.0 bits (201), Expect = 5e-14
Identities = 37/102 (36%), Positives = 63/102 (61%)
Frame = +1
Query: 10 GRANYLDEAVNVFYQMQEEGCEPDRVTYCTLIDIHAKSGFLDVALDMYGRMQEAGLTPDT 189
G+A +L A +F +M ++GC P+ VTY ++D+HAK+ AL +Y MQ AG PD
Sbjct: 597 GKAGHLPAAHKLFCEMVDQGCTPNLVTYNIMMDLHAKARNYQNALKLYRDMQNAGFEPDK 656
Query: 190 FTYSVIINCLGKAGHLDASYKLFSEMIDQGCVPNLVTYNIMI 315
TYS+++ LG G+L+ + +F+EM + +P+ Y +++
Sbjct: 657 VTYSIVMEVLGHCGYLEEAEAVFTEMQQKNWIPDEPVYGLLV 698
Score = 66.6 bits (161), Expect = 2e-09
Identities = 29/104 (27%), Positives = 60/104 (57%)
Frame = +1
Query: 7 YGRANYLDEAVNVFYQMQEEGCEPDRVTYCTLIDIHAKSGFLDVALDMYGRMQEAGLTPD 186
+ +A A+ ++ MQ G EPD+VTY ++++ G+L+ A ++ MQ+ PD
Sbjct: 631 HAKARNYQNALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLEEAEAVFTEMQQKNWIPD 690
Query: 187 TFTYSVIINCLGKAGHLDASYKLFSEMIDQGCVPNLVTYNIMIA 318
Y ++++ GKAG+++ +++ + M+ G PN+ T N +++
Sbjct: 691 EPVYGLLVDLWGKAGNVEKAWQWYQAMLHAGLRPNVPTCNSLLS 734
Score = 63.5 bits (153), Expect = 2e-08
Identities = 32/103 (31%), Positives = 56/103 (54%)
Frame = +1
Query: 10 GRANYLDEAVNVFYQMQEEGCEPDRVTYCTLIDIHAKSGFLDVALDMYGRMQEAGLTPDT 189
G YL+EA VF +MQ++ PD Y L+D+ K+G ++ A Y M AGL P+
Sbjct: 667 GHCGYLEEAEAVFTEMQQKNWIPDEPVYGLLVDLWGKAGNVEKAWQWYQAMLHAGLRPNV 726
Query: 190 FTYSVIINCLGKAGHLDASYKLFSEMIDQGCVPNLVTYNIMIA 318
T + +++ + + +Y+L M+ G P+L TY ++++
Sbjct: 727 PTCNSLLSTFLRVNKIAEAYELLQNMLALGLRPSLQTYTLLLS 769