BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00037576
         (302 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002285900.1| PREDICTED: DNA-directed RNA polymerase II su...   173   1e-41
gb|AAY89350.1| RNA polymerase II largest subunit [Solanum lycope...   172   2e-41
gb|AFW57310.1| RNA polymerase II large subunit family protein [Z...   171   4e-41
gb|EEE68068.1| hypothetical protein OsJ_26081 [Oryza sativa Japo...   171   4e-41
gb|EEC82922.1| hypothetical protein OsI_27866 [Oryza sativa Indi...   171   4e-41

>ref|XP_002285900.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like [Vitis
            vinifera]
          Length = 1848

 Score =  173 bits (438), Expect = 1e-41
 Identities = 85/100 (85%), Positives = 93/100 (93%)
 Frame = -3

Query: 300  PSDMHPNEIVEAVERLQERLKVVPGNDFLSVEAQKNATLLFNILLRSTLASKRVLNEYRL 121
            PSDMHP EIVEAV++LQERLKVVPG+D +S+EAQKNATL FNILLRST ASKRVL EYRL
Sbjct: 997  PSDMHPMEIVEAVDKLQERLKVVPGDDLISMEAQKNATLFFNILLRSTFASKRVLKEYRL 1056

Query: 120  TRGAFDWIIGEIESRFLQSFVAPGEMVGCVAAQSIGEPAT 1
            TR AF+W+IGEIESRFLQS VAPGEM+GCVAAQSIGEPAT
Sbjct: 1057 TREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPAT 1096


>gb|AAY89350.1| RNA polymerase II largest subunit [Solanum lycopersicum]
          Length = 773

 Score =  172 bits (437), Expect = 2e-41
 Identities = 84/100 (84%), Positives = 94/100 (94%)
 Frame = -3

Query: 300 PSDMHPNEIVEAVERLQERLKVVPGNDFLSVEAQKNATLLFNILLRSTLASKRVLNEYRL 121
           PSDMHP EIVEAV++LQERLKVVPG+D+LS+EAQKNATL FNILLRS LASKRVL EYRL
Sbjct: 674 PSDMHPMEIVEAVDKLQERLKVVPGDDYLSMEAQKNATLFFNILLRSALASKRVLKEYRL 733

Query: 120 TRGAFDWIIGEIESRFLQSFVAPGEMVGCVAAQSIGEPAT 1
           +R AF+W++GEIESRFLQS VAPGEM+GCVAAQSIGEPAT
Sbjct: 734 SREAFEWVVGEIESRFLQSLVAPGEMIGCVAAQSIGEPAT 773


>gb|AFW57310.1| RNA polymerase II large subunit family protein [Zea mays]
          Length = 1850

 Score =  171 bits (434), Expect = 4e-41
 Identities = 83/100 (83%), Positives = 93/100 (93%)
 Frame = -3

Query: 300  PSDMHPNEIVEAVERLQERLKVVPGNDFLSVEAQKNATLLFNILLRSTLASKRVLNEYRL 121
            PSDMHP EIVEA+++LQERLKVVPG+D +S+EAQKNATL FNILLRST ASKRVL EYRL
Sbjct: 996  PSDMHPMEIVEAIDKLQERLKVVPGDDAMSIEAQKNATLFFNILLRSTFASKRVLKEYRL 1055

Query: 120  TRGAFDWIIGEIESRFLQSFVAPGEMVGCVAAQSIGEPAT 1
            T+ AF+W+IGEIESRFLQS VAPGEM+GCVAAQSIGEPAT
Sbjct: 1056 TKEAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPAT 1095


>gb|EEE68068.1| hypothetical protein OsJ_26081 [Oryza sativa Japonica Group]
          Length = 1526

 Score =  171 bits (434), Expect = 4e-41
 Identities = 83/100 (83%), Positives = 93/100 (93%)
 Frame = -3

Query: 300 PSDMHPNEIVEAVERLQERLKVVPGNDFLSVEAQKNATLLFNILLRSTLASKRVLNEYRL 121
           PSDMHP EIVEA+++LQERLKVVPG+D +S+EAQKNATL FNILLRST ASKRVL EYRL
Sbjct: 668 PSDMHPMEIVEAIDKLQERLKVVPGDDAMSIEAQKNATLFFNILLRSTFASKRVLKEYRL 727

Query: 120 TRGAFDWIIGEIESRFLQSFVAPGEMVGCVAAQSIGEPAT 1
           T+ AF+W+IGEIESRFLQS VAPGEM+GCVAAQSIGEPAT
Sbjct: 728 TKEAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPAT 767


>gb|EEC82922.1| hypothetical protein OsI_27866 [Oryza sativa Indica Group]
          Length = 1449

 Score =  171 bits (434), Expect = 4e-41
 Identities = 83/100 (83%), Positives = 93/100 (93%)
 Frame = -3

Query: 300  PSDMHPNEIVEAVERLQERLKVVPGNDFLSVEAQKNATLLFNILLRSTLASKRVLNEYRL 121
            PSDMHP EIVEA+++LQERLKVVPG+D +S+EAQKNATL FNILLRST ASKRVL EYRL
Sbjct: 967  PSDMHPMEIVEAIDKLQERLKVVPGDDAMSIEAQKNATLFFNILLRSTFASKRVLKEYRL 1026

Query: 120  TRGAFDWIIGEIESRFLQSFVAPGEMVGCVAAQSIGEPAT 1
            T+ AF+W+IGEIESRFLQS VAPGEM+GCVAAQSIGEPAT
Sbjct: 1027 TKEAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPAT 1066