BLASTX nr result
ID: Coptis23_contig00037450
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis23_contig00037450
(437 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CBI28135.3| unnamed protein product [Vitis vinifera] 194 8e-48
ref|XP_002281645.1| PREDICTED: pentatricopeptide repeat-containi... 194 8e-48
gb|ACZ98537.1| PPR motif protein [Malus x domestica] 183 1e-44
ref|XP_004149853.1| PREDICTED: pentatricopeptide repeat-containi... 178 5e-43
ref|XP_003628782.1| Pentatricopeptide repeat-containing protein ... 166 1e-39
>emb|CBI28135.3| unnamed protein product [Vitis vinifera]
Length = 1974
Score = 194 bits (492), Expect = 8e-48
Identities = 92/142 (64%), Positives = 118/142 (83%)
Frame = +1
Query: 4 ESILLFKQMQAVGLRPNTASIIGVLSACIKVVSLQYGRAIHGYITRHNFLSSLSISTSLV 183
E+IL F++MQ G+RP+ ASI VL AC + SL YGRAIHG+ITRH F S+ ++TSLV
Sbjct: 1633 EAILFFQKMQEAGIRPSIASITSVLLACTDIPSLWYGRAIHGFITRHEFCLSVPVATSLV 1692
Query: 184 DMYAKCGSLCLANRVFNILLNKELPIYNVMISGYAIHGRAVEALALFEQMQKEGLKPDGI 363
DMYAKCGS+ A +VF+++ +KELPIYN MIS YA+HG+AVEALALF+ +QKEG++PD I
Sbjct: 1693 DMYAKCGSIDEAKKVFHMMSSKELPIYNAMISAYALHGQAVEALALFKHLQKEGIEPDSI 1752
Query: 364 TFTAVLSACSHAGLVDEGLEVF 429
TFT++LSACSHAGLV+EGL +F
Sbjct: 1753 TFTSILSACSHAGLVNEGLNLF 1774
Score = 94.0 bits (232), Expect = 1e-17
Identities = 49/139 (35%), Positives = 84/139 (60%)
Frame = +1
Query: 1 DESILLFKQMQAVGLRPNTASIIGVLSACIKVVSLQYGRAIHGYITRHNFLSSLSISTSL 180
++++L F +MQ G+ P+ + VL AC + + G+ +HGY+ + F + + +S+SL
Sbjct: 1259 EDALLGFIEMQENGVFPDNFVLPNVLKACGSLQLIGLGKGVHGYVLKMGFGACVFVSSSL 1318
Query: 181 VDMYAKCGSLCLANRVFNILLNKELPIYNVMISGYAIHGRAVEALALFEQMQKEGLKPDG 360
VDMY KCG L A +VF+ ++ K + +N MI GY +G EA+ +F M+ EG++P
Sbjct: 1319 VDMYGKCGVLEDARKVFDSMVEKNVVTWNSMIVGYVQNGLNQEAIDVFYDMRVEGIEPTR 1378
Query: 361 ITFTAVLSACSHAGLVDEG 417
+T + LSA ++ + EG
Sbjct: 1379 VTVASFLSASANLDALIEG 1397
Score = 80.9 bits (198), Expect = 1e-13
Identities = 42/136 (30%), Positives = 81/136 (59%)
Frame = +1
Query: 28 MQAVGLRPNTASIIGVLSACIKVVSLQYGRAIHGYITRHNFLSSLSISTSLVDMYAKCGS 207
M++ LR ++ ++ +LSA +++ G+ H Y R N S + ++ S++DMYAKC
Sbjct: 1470 MRSENLRFDSVTLSSILSASAVTSNIKLGKEGHCYCIRRNLESDVVVANSIIDMYAKCER 1529
Query: 208 LCLANRVFNILLNKELPIYNVMISGYAIHGRAVEALALFEQMQKEGLKPDGITFTAVLSA 387
+ A +VF+ ++L ++N +++ YA G + EAL LF QMQ + + P+ I++ +V+
Sbjct: 1530 IDDARKVFDSTTERDLVLWNTLLAAYAQVGLSGEALKLFYQMQFDSVPPNVISWNSVILG 1589
Query: 388 CSHAGLVDEGLEVFTK 435
G V+E ++F++
Sbjct: 1590 FLRNGQVNEAKDMFSQ 1605
Score = 65.5 bits (158), Expect = 4e-09
Identities = 38/140 (27%), Positives = 74/140 (52%)
Frame = +1
Query: 4 ESILLFKQMQAVGLRPNTASIIGVLSACIKVVSLQYGRAIHGYITRHNFLSSLSISTSLV 183
E+I +F M+ G+ P ++ LSA + +L G+ H ++ + +S++
Sbjct: 1361 EAIDVFYDMRVEGIEPTRVTVASFLSASANLDALIEGKQGHAIAILNSLDLDNILGSSII 1420
Query: 184 DMYAKCGSLCLANRVFNILLNKELPIYNVMISGYAIHGRAVEALALFEQMQKEGLKPDGI 363
+ Y+K G + A VF+ +L K++ +N++IS Y H + +AL + M+ E L+ D +
Sbjct: 1421 NFYSKVGLIEDAELVFSRMLEKDVVTWNLLISSYVQHHQVGKALNMCHLMRSENLRFDSV 1480
Query: 364 TFTAVLSACSHAGLVDEGLE 423
T +++LSA + + G E
Sbjct: 1481 TLSSILSASAVTSNIKLGKE 1500
>ref|XP_002281645.1| PREDICTED: pentatricopeptide repeat-containing protein At5g55740,
chloroplastic-like [Vitis vinifera]
Length = 858
Score = 194 bits (492), Expect = 8e-48
Identities = 92/142 (64%), Positives = 118/142 (83%)
Frame = +1
Query: 4 ESILLFKQMQAVGLRPNTASIIGVLSACIKVVSLQYGRAIHGYITRHNFLSSLSISTSLV 183
E+IL F++MQ G+RP+ ASI VL AC + SL YGRAIHG+ITRH F S+ ++TSLV
Sbjct: 538 EAILFFQKMQEAGIRPSIASITSVLLACTDIPSLWYGRAIHGFITRHEFCLSVPVATSLV 597
Query: 184 DMYAKCGSLCLANRVFNILLNKELPIYNVMISGYAIHGRAVEALALFEQMQKEGLKPDGI 363
DMYAKCGS+ A +VF+++ +KELPIYN MIS YA+HG+AVEALALF+ +QKEG++PD I
Sbjct: 598 DMYAKCGSIDEAKKVFHMMSSKELPIYNAMISAYALHGQAVEALALFKHLQKEGIEPDSI 657
Query: 364 TFTAVLSACSHAGLVDEGLEVF 429
TFT++LSACSHAGLV+EGL +F
Sbjct: 658 TFTSILSACSHAGLVNEGLNLF 679
Score = 94.0 bits (232), Expect = 1e-17
Identities = 49/139 (35%), Positives = 84/139 (60%)
Frame = +1
Query: 1 DESILLFKQMQAVGLRPNTASIIGVLSACIKVVSLQYGRAIHGYITRHNFLSSLSISTSL 180
++++L F +MQ G+ P+ + VL AC + + G+ +HGY+ + F + + +S+SL
Sbjct: 164 EDALLGFIEMQENGVFPDNFVLPNVLKACGSLQLIGLGKGVHGYVLKMGFGACVFVSSSL 223
Query: 181 VDMYAKCGSLCLANRVFNILLNKELPIYNVMISGYAIHGRAVEALALFEQMQKEGLKPDG 360
VDMY KCG L A +VF+ ++ K + +N MI GY +G EA+ +F M+ EG++P
Sbjct: 224 VDMYGKCGVLEDARKVFDSMVEKNVVTWNSMIVGYVQNGLNQEAIDVFYDMRVEGIEPTR 283
Query: 361 ITFTAVLSACSHAGLVDEG 417
+T + LSA ++ + EG
Sbjct: 284 VTVASFLSASANLDALIEG 302
Score = 80.9 bits (198), Expect = 1e-13
Identities = 42/136 (30%), Positives = 81/136 (59%)
Frame = +1
Query: 28 MQAVGLRPNTASIIGVLSACIKVVSLQYGRAIHGYITRHNFLSSLSISTSLVDMYAKCGS 207
M++ LR ++ ++ +LSA +++ G+ H Y R N S + ++ S++DMYAKC
Sbjct: 375 MRSENLRFDSVTLSSILSASAVTSNIKLGKEGHCYCIRRNLESDVVVANSIIDMYAKCER 434
Query: 208 LCLANRVFNILLNKELPIYNVMISGYAIHGRAVEALALFEQMQKEGLKPDGITFTAVLSA 387
+ A +VF+ ++L ++N +++ YA G + EAL LF QMQ + + P+ I++ +V+
Sbjct: 435 IDDARKVFDSTTERDLVLWNTLLAAYAQVGLSGEALKLFYQMQFDSVPPNVISWNSVILG 494
Query: 388 CSHAGLVDEGLEVFTK 435
G V+E ++F++
Sbjct: 495 FLRNGQVNEAKDMFSQ 510
Score = 65.5 bits (158), Expect = 4e-09
Identities = 38/140 (27%), Positives = 74/140 (52%)
Frame = +1
Query: 4 ESILLFKQMQAVGLRPNTASIIGVLSACIKVVSLQYGRAIHGYITRHNFLSSLSISTSLV 183
E+I +F M+ G+ P ++ LSA + +L G+ H ++ + +S++
Sbjct: 266 EAIDVFYDMRVEGIEPTRVTVASFLSASANLDALIEGKQGHAIAILNSLDLDNILGSSII 325
Query: 184 DMYAKCGSLCLANRVFNILLNKELPIYNVMISGYAIHGRAVEALALFEQMQKEGLKPDGI 363
+ Y+K G + A VF+ +L K++ +N++IS Y H + +AL + M+ E L+ D +
Sbjct: 326 NFYSKVGLIEDAELVFSRMLEKDVVTWNLLISSYVQHHQVGKALNMCHLMRSENLRFDSV 385
Query: 364 TFTAVLSACSHAGLVDEGLE 423
T +++LSA + + G E
Sbjct: 386 TLSSILSASAVTSNIKLGKE 405
>gb|ACZ98537.1| PPR motif protein [Malus x domestica]
Length = 751
Score = 183 bits (465), Expect = 1e-44
Identities = 89/142 (62%), Positives = 113/142 (79%)
Frame = +1
Query: 4 ESILLFKQMQAVGLRPNTASIIGVLSACIKVVSLQYGRAIHGYITRHNFLSSLSISTSLV 183
E+IL F++MQ G++PN SIIGVL ACI + SLQ GRA+HGY+ RH+ S+ I+TSLV
Sbjct: 455 EAILTFQRMQEAGVKPNVVSIIGVLLACINLASLQIGRALHGYLIRHSLYLSIPIATSLV 514
Query: 184 DMYAKCGSLCLANRVFNILLNKELPIYNVMISGYAIHGRAVEALALFEQMQKEGLKPDGI 363
DMYAKCG A RVF+++ +KELPIYN MISG+A+HG+AVEALAL+ +++EGLKPD I
Sbjct: 515 DMYAKCGDRDQAKRVFDMIPDKELPIYNAMISGFALHGQAVEALALYRCLKEEGLKPDNI 574
Query: 364 TFTAVLSACSHAGLVDEGLEVF 429
TFT L ACSHA +V EGLE+F
Sbjct: 575 TFTNALYACSHAMMVSEGLELF 596
Score = 87.8 bits (216), Expect = 8e-16
Identities = 47/143 (32%), Positives = 88/143 (61%)
Frame = +1
Query: 1 DESILLFKQMQAVGLRPNTASIIGVLSACIKVVSLQYGRAIHGYITRHNFLSSLSISTSL 180
D+++ + M+ LR ++ ++ ++SA + +L+ G+ H Y R+N S + + +S+
Sbjct: 283 DKALNMCHLMRLENLRFDSVTLATLMSAFADMRNLKLGKEGHCYCIRNNLESDVVVVSSI 342
Query: 181 VDMYAKCGSLCLANRVFNILLNKELPIYNVMISGYAIHGRAVEALALFEQMQKEGLKPDG 360
VDMYAKC + A RVFN + K+L ++N M++ +A G + EAL LF QMQ E + P+
Sbjct: 343 VDMYAKCEKIGCARRVFNSSITKDLILWNTMLAAFAELGHSGEALNLFYQMQLESVPPNV 402
Query: 361 ITFTAVLSACSHAGLVDEGLEVF 429
I++ +++ ++G V+E ++F
Sbjct: 403 ISWNSLILGFLNSGQVNEAKDMF 425
Score = 67.8 bits (164), Expect = 9e-10
Identities = 38/129 (29%), Positives = 71/129 (55%)
Frame = +1
Query: 1 DESILLFKQMQAVGLRPNTASIIGVLSACIKVVSLQYGRAIHGYITRHNFLSSLSISTSL 180
+E+I +F +M+ G+ P ++ LSA + +LQ G+ H + ++ +SL
Sbjct: 182 EEAIEVFYEMREEGVEPTQVTLSSFLSASANLGALQDGKQGHAIAVICGIEMTTNLGSSL 241
Query: 181 VDMYAKCGSLCLANRVFNILLNKELPIYNVMISGYAIHGRAVEALALFEQMQKEGLKPDG 360
++ Y+K G + A VF+ +L K++ +N++ISGY G +AL + M+ E L+ D
Sbjct: 242 INFYSKVGLIEDAESVFSRMLEKDVVTWNLLISGYVQIGEVDKALNMCHLMRLENLRFDS 301
Query: 361 ITFTAVLSA 387
+T ++SA
Sbjct: 302 VTLATLMSA 310
>ref|XP_004149853.1| PREDICTED: pentatricopeptide repeat-containing protein At5g55740,
chloroplastic-like [Cucumis sativus]
gi|449520209|ref|XP_004167126.1| PREDICTED:
pentatricopeptide repeat-containing protein At5g55740,
chloroplastic-like [Cucumis sativus]
Length = 840
Score = 178 bits (451), Expect = 5e-43
Identities = 85/143 (59%), Positives = 112/143 (78%)
Frame = +1
Query: 1 DESILLFKQMQAVGLRPNTASIIGVLSACIKVVSLQYGRAIHGYITRHNFLSSLSISTSL 180
DE+ L F+ M+ G++PN+ SI +LSAC + SL +GRAIH YITRH S + SL
Sbjct: 536 DEAFLTFQSMEEAGIKPNSLSISSLLSACSTMASLPHGRAIHCYITRHELSVSTPVLCSL 595
Query: 181 VDMYAKCGSLCLANRVFNILLNKELPIYNVMISGYAIHGRAVEALALFEQMQKEGLKPDG 360
V+MYAKCGS+ A RVF+++L KELP+YN MISGYA+HG+AVEAL+LF ++++E +KPD
Sbjct: 596 VNMYAKCGSINQAKRVFDMILKKELPVYNAMISGYALHGQAVEALSLFRRLKEECIKPDE 655
Query: 361 ITFTAVLSACSHAGLVDEGLEVF 429
ITFT++LSAC HAGLV EGLE+F
Sbjct: 656 ITFTSILSACGHAGLVREGLELF 678
Score = 93.6 bits (231), Expect = 1e-17
Identities = 47/143 (32%), Positives = 86/143 (60%)
Frame = +1
Query: 1 DESILLFKQMQAVGLRPNTASIIGVLSACIKVVSLQYGRAIHGYITRHNFLSSLSISTSL 180
D ++ L MQ+ LR ++ ++ +++A +L+ G+ H + R+N S +++++S+
Sbjct: 365 DRALDLCHVMQSENLRFDSVTLASIMAAAADSRNLKLGKEGHSFCVRNNLESDVAVASSI 424
Query: 181 VDMYAKCGSLCLANRVFNILLNKELPIYNVMISGYAIHGRAVEALALFEQMQKEGLKPDG 360
+DMYAKC L A RVF+ ++L ++N +++ YA G + E L LF QMQ EGL P+
Sbjct: 425 IDMYAKCEKLECARRVFDATAKRDLIMWNTLLAAYAEQGHSGETLKLFYQMQLEGLPPNV 484
Query: 361 ITFTAVLSACSHAGLVDEGLEVF 429
I++ +V+ + G VD+ + F
Sbjct: 485 ISWNSVILGLLNKGKVDQAKDTF 507
Score = 81.6 bits (200), Expect = 6e-14
Identities = 42/138 (30%), Positives = 78/138 (56%)
Frame = +1
Query: 4 ESILLFKQMQAVGLRPNTASIIGVLSACIKVVSLQYGRAIHGYITRHNFLSSLSISTSLV 183
E+++ F++M GL + I A + + +G+++H Y+ + + ++TSL+
Sbjct: 164 EALMGFREMHEYGLLLDNFVIPIAFKASGALRWIGFGKSVHAYVVKMGLGGCIYVATSLL 223
Query: 184 DMYAKCGSLCLANRVFNILLNKELPIYNVMISGYAIHGRAVEALALFEQMQKEGLKPDGI 363
DMY KCG A +VF+ +L K + +N MI + +G EA+ F +M+ EG+ P +
Sbjct: 224 DMYGKCGLCEEAKKVFDKILEKNIVAWNSMIVNFTQNGLNAEAVETFYEMRVEGVAPTQV 283
Query: 364 TFTAVLSACSHAGLVDEG 417
T ++ LSA ++ ++DEG
Sbjct: 284 TLSSFLSASANLSVIDEG 301
Score = 63.9 bits (154), Expect = 1e-08
Identities = 37/140 (26%), Positives = 71/140 (50%)
Frame = +1
Query: 4 ESILLFKQMQAVGLRPNTASIIGVLSACIKVVSLQYGRAIHGYITRHNFLSSLSISTSLV 183
E++ F +M+ G+ P ++ LSA + + G+ H + + +SL+
Sbjct: 265 EAVETFYEMRVEGVAPTQVTLSSFLSASANLSVIDEGKQGHALAVLSGLELTNILGSSLI 324
Query: 184 DMYAKCGSLCLANRVFNILLNKELPIYNVMISGYAIHGRAVEALALFEQMQKEGLKPDGI 363
+ Y+K G + A VF+ +L K+ +N+++SGY +G AL L MQ E L+ D +
Sbjct: 325 NFYSKVGLVEDAELVFSEMLEKDTVTWNLLVSGYVHNGLVDRALDLCHVMQSENLRFDSV 384
Query: 364 TFTAVLSACSHAGLVDEGLE 423
T ++++A + + + G E
Sbjct: 385 TLASIMAAAADSRNLKLGKE 404
>ref|XP_003628782.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355522804|gb|AET03258.1| Pentatricopeptide
repeat-containing protein [Medicago truncatula]
Length = 1002
Score = 166 bits (421), Expect = 1e-39
Identities = 81/142 (57%), Positives = 105/142 (73%)
Frame = +1
Query: 4 ESILLFKQMQAVGLRPNTASIIGVLSACIKVVSLQYGRAIHGYITRHNFLSSLSISTSLV 183
E+ +F+QMQ G+RPN+ SI LSAC + L YGR+IHGY+ R+ SL I+TS++
Sbjct: 571 EASRVFQQMQGAGMRPNSISITSALSACTNMALLNYGRSIHGYVMRNFMSFSLQITTSII 630
Query: 184 DMYAKCGSLCLANRVFNILLNKELPIYNVMISGYAIHGRAVEALALFEQMQKEGLKPDGI 363
DMYAKCG+L A VF I KELP+YN MIS YA HG++ EALALF+++ K+G+ PD I
Sbjct: 631 DMYAKCGNLDDAKFVFIICSTKELPVYNAMISAYASHGKSAEALALFQELVKQGIMPDHI 690
Query: 364 TFTAVLSACSHAGLVDEGLEVF 429
TFT+VLSACSH L+ EGLE+F
Sbjct: 691 TFTSVLSACSHGRLLKEGLELF 712
Score = 87.8 bits (216), Expect = 8e-16
Identities = 51/143 (35%), Positives = 86/143 (60%), Gaps = 5/143 (3%)
Frame = +1
Query: 4 ESILLFKQMQAVGLRPNTASIIGVLSACIKVVSLQYGRAIHGYITR--HNFLSSLSISTS 177
E++L + +M G P+ + L AC + + +GR IHG++ + + F + ++TS
Sbjct: 190 EALLSYVEMMEKGFCPDNFVVPNGLKACGGLRWIGFGRGIHGFVVKMGNEFDGCVYVATS 249
Query: 178 LVDMYAKCGSLCLANRVFNILLNKEL--PIYNVMISGYAIHGRAVEALALFEQMQKE-GL 348
LVDMY KCG L A +VF+ + N++ ++N MI GY +G VEA+ LFE+M+ E G+
Sbjct: 250 LVDMYGKCGVLEDAEKVFDEMPNRKRNDVVWNSMIVGYVQNGMNVEAVGLFEKMRFEGGV 309
Query: 349 KPDGITFTAVLSACSHAGLVDEG 417
+P ++ + SAC++ V+EG
Sbjct: 310 EPSEVSLSGFFSACANLEAVEEG 332
Score = 72.8 bits (177), Expect = 3e-11
Identities = 38/132 (28%), Positives = 76/132 (57%), Gaps = 1/132 (0%)
Frame = +1
Query: 43 LRPNTASIIGVLSACIKVVSLQYGRAIHGYITRHNFLSSLSISTSLVDMYAKCGSLCLAN 222
LR + ++ +L+ ++ G+ +HG+ R+ F S +++ + ++DMYAKCG + A
Sbjct: 412 LRFDCVTLSSLLALAADTRDVKLGKKLHGFCIRNEFYSDMAVLSGVLDMYAKCGIMDCAR 471
Query: 223 RVFNIL-LNKELPIYNVMISGYAIHGRAVEALALFEQMQKEGLKPDGITFTAVLSACSHA 399
VF+ K++ ++N M++ A G + EAL LF QMQ E + P+ +++ +++
Sbjct: 472 GVFHFAGKKKDIVLWNTMLAACAEKGLSGEALKLFFQMQMESVPPNVVSWNSLIFGFFRN 531
Query: 400 GLVDEGLEVFTK 435
G V E ++F++
Sbjct: 532 GQVVEAQDMFSE 543