BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00037339
         (523 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004162698.1| PREDICTED: DNA-directed RNA polymerase 3, ch...   323   1e-86
ref|XP_004144791.1| PREDICTED: DNA-directed RNA polymerase 3, ch...   323   1e-86
emb|CAC95026.1| plastid RNA polymerase [Nicotiana tabacum]            323   1e-86
sp|Q8L6J1.2|RPO3B_TOBAC RecName: Full=DNA-directed RNA polymeras...   323   1e-86
ref|XP_002308414.1| predicted protein [Populus trichocarpa] gi|2...   321   4e-86

>ref|XP_004162698.1| PREDICTED: DNA-directed RNA polymerase 3, chloroplastic-like [Cucumis
            sativus]
          Length = 975

 Score =  323 bits (827), Expect = 1e-86
 Identities = 147/171 (85%), Positives = 160/171 (93%)
 Frame = -1

Query: 523  ERHAQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGVLEFGE 344
            E H+QRCD+ELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGVLEF E
Sbjct: 523  ELHSQRCDVELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGVLEFAE 582

Query: 343  GRPLGEAGLHWLKIHLANLYAGGVEKLSYDRRLAFTENHLTDIVDSADKPIDGKRWWLNA 164
            GRPLG++GLHWLKIHLANLYAGGVEKLSYD RLAF ++HL +I DSA  P++G RWWL A
Sbjct: 583  GRPLGKSGLHWLKIHLANLYAGGVEKLSYDERLAFVDDHLDNIFDSASNPVNGDRWWLTA 642

Query: 163  EDPFQCLAACINLSEALKSSSPHNVISHLPIHQDGSCNGLQHYAALGRDTV 11
            EDPFQCLAAC+NLSEALKSS+PH VIS+LPIHQDGSCNGLQHYAALGRDT+
Sbjct: 643  EDPFQCLAACMNLSEALKSSAPHTVISYLPIHQDGSCNGLQHYAALGRDTL 693


>ref|XP_004144791.1| PREDICTED: DNA-directed RNA polymerase 3, chloroplastic-like [Cucumis
            sativus]
          Length = 975

 Score =  323 bits (827), Expect = 1e-86
 Identities = 147/171 (85%), Positives = 160/171 (93%)
 Frame = -1

Query: 523  ERHAQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGVLEFGE 344
            E H+QRCD+ELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGVLEF E
Sbjct: 523  ELHSQRCDVELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGVLEFAE 582

Query: 343  GRPLGEAGLHWLKIHLANLYAGGVEKLSYDRRLAFTENHLTDIVDSADKPIDGKRWWLNA 164
            GRPLG++GLHWLKIHLANLYAGGVEKLSYD RLAF ++HL +I DSA  P++G RWWL A
Sbjct: 583  GRPLGKSGLHWLKIHLANLYAGGVEKLSYDERLAFVDDHLDNIFDSASNPVNGDRWWLTA 642

Query: 163  EDPFQCLAACINLSEALKSSSPHNVISHLPIHQDGSCNGLQHYAALGRDTV 11
            EDPFQCLAAC+NLSEALKSS+PH VIS+LPIHQDGSCNGLQHYAALGRDT+
Sbjct: 643  EDPFQCLAACMNLSEALKSSAPHTVISYLPIHQDGSCNGLQHYAALGRDTL 693


>emb|CAC95026.1| plastid RNA polymerase [Nicotiana tabacum]
          Length = 557

 Score =  323 bits (827), Expect = 1e-86
 Identities = 147/171 (85%), Positives = 160/171 (93%)
 Frame = -1

Query: 523 ERHAQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGVLEFGE 344
           E H+QRCD ELKLSVARK+KDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRG+LEF E
Sbjct: 108 ELHSQRCDTELKLSVARKLKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGILEFAE 167

Query: 343 GRPLGEAGLHWLKIHLANLYAGGVEKLSYDRRLAFTENHLTDIVDSADKPIDGKRWWLNA 164
           GRPLG++GL WLKIHLA+LYAGGVEKL YD RLAF ENH+ DI+DSA+ P++G RWWLNA
Sbjct: 168 GRPLGKSGLRWLKIHLASLYAGGVEKLCYDARLAFVENHIHDILDSANNPLNGNRWWLNA 227

Query: 163 EDPFQCLAACINLSEALKSSSPHNVISHLPIHQDGSCNGLQHYAALGRDTV 11
           EDPFQCLAACINLSEALKSSSPH VISHLPIHQDGSCNGLQHYAALGRD++
Sbjct: 228 EDPFQCLAACINLSEALKSSSPHTVISHLPIHQDGSCNGLQHYAALGRDSM 278


>sp|Q8L6J1.2|RPO3B_TOBAC RecName: Full=DNA-directed RNA polymerase 3B, chloroplastic; AltName:
            Full=NictaRpoT3-tom; AltName: Full=T7 bacteriophage-type
            single subunit RNA polymerase 3B; Flags: Precursor
            gi|21425667|emb|CAC95021.2| chloroplast RNA polymerase
            [Nicotiana tabacum]
          Length = 977

 Score =  323 bits (827), Expect = 1e-86
 Identities = 147/171 (85%), Positives = 160/171 (93%)
 Frame = -1

Query: 523  ERHAQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGVLEFGE 344
            E H+QRCD ELKLSVARK+KDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRG+LEF E
Sbjct: 525  ELHSQRCDTELKLSVARKLKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGILEFAE 584

Query: 343  GRPLGEAGLHWLKIHLANLYAGGVEKLSYDRRLAFTENHLTDIVDSADKPIDGKRWWLNA 164
            GRPLG++GL WLKIHLA+LYAGGVEKL YD RLAF ENH+ DI+DSA+ P++G RWWLNA
Sbjct: 585  GRPLGKSGLRWLKIHLASLYAGGVEKLCYDARLAFVENHIHDILDSANNPLNGNRWWLNA 644

Query: 163  EDPFQCLAACINLSEALKSSSPHNVISHLPIHQDGSCNGLQHYAALGRDTV 11
            EDPFQCLAACINLSEALKSSSPH VISHLPIHQDGSCNGLQHYAALGRD++
Sbjct: 645  EDPFQCLAACINLSEALKSSSPHTVISHLPIHQDGSCNGLQHYAALGRDSM 695


>ref|XP_002308414.1| predicted protein [Populus trichocarpa] gi|222854390|gb|EEE91937.1|
            predicted protein [Populus trichocarpa]
          Length = 982

 Score =  321 bits (823), Expect = 4e-86
 Identities = 147/170 (86%), Positives = 160/170 (94%)
 Frame = -1

Query: 523  ERHAQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGVLEFGE 344
            ERH+QRCD ELKLSVARK+KDEEGFYYPHNLDFRGRAYPMHPHL HLSSDLCRGVLEF E
Sbjct: 530  ERHSQRCDTELKLSVARKLKDEEGFYYPHNLDFRGRAYPMHPHLTHLSSDLCRGVLEFAE 589

Query: 343  GRPLGEAGLHWLKIHLANLYAGGVEKLSYDRRLAFTENHLTDIVDSADKPIDGKRWWLNA 164
            GRPLG++GL WLKIHLANLY+GGVEKLS+D RLAF ENHL++I DSA+ P++GKRWWL A
Sbjct: 590  GRPLGKSGLCWLKIHLANLYSGGVEKLSHDGRLAFVENHLSEIFDSAENPVNGKRWWLTA 649

Query: 163  EDPFQCLAACINLSEALKSSSPHNVISHLPIHQDGSCNGLQHYAALGRDT 14
            EDPFQCLAACINLSEALKS+SPH VISHLPIHQDGSCNGLQHYAALGRD+
Sbjct: 650  EDPFQCLAACINLSEALKSASPHTVISHLPIHQDGSCNGLQHYAALGRDS 699