BLASTX nr result

ID: Coptis23_contig00037236 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00037236
         (307 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002512500.1| histidine kinase 1 plant, putative [Ricinus ...    61   1e-07
ref|XP_002319485.1| histidine kinase cytokinin receptor [Populus...    56   3e-06

>ref|XP_002512500.1| histidine kinase 1 plant, putative [Ricinus communis]
           gi|223548461|gb|EEF49952.1| histidine kinase 1 plant,
           putative [Ricinus communis]
          Length = 912

 Score = 60.8 bits (146), Expect = 1e-07
 Identities = 37/69 (53%), Positives = 44/69 (63%), Gaps = 3/69 (4%)
 Frame = -3

Query: 206 QEVVGSVP---RNDNLLAGKNVLVVEDGRMLRKVAIFALKKLGATVECCENGEEAVIQVR 36
           Q+VV + P    ND  L GK VLVVED  +LR++    L KLGA VE C NGEEA+ QV 
Sbjct: 759 QQVVMNKPDEKHNDKPLNGKKVLVVEDAELLRRIVTTTLGKLGANVEACTNGEEALTQVC 818

Query: 35  GALQESDQR 9
            AL  SDQ+
Sbjct: 819 KAL--SDQK 825


>ref|XP_002319485.1| histidine kinase cytokinin receptor [Populus trichocarpa]
            gi|222857861|gb|EEE95408.1| histidine kinase cytokinin
            receptor [Populus trichocarpa]
          Length = 1001

 Score = 55.8 bits (133), Expect = 3e-06
 Identities = 39/84 (46%), Positives = 51/84 (60%), Gaps = 2/84 (2%)
 Frame = -3

Query: 254  EIAQP-SSDPGPSTGRIQEV-VGSVPRNDNLLAGKNVLVVEDGRMLRKVAIFALKKLGAT 81
            ++A P SS   P+T     V  GS P N     GKNVLVVED  +L+++    LKKLGA+
Sbjct: 837  DLASPQSSSLQPTTANKPTVEAGSKPLN-----GKNVLVVEDSMLLQRLTSSVLKKLGAS 891

Query: 80   VECCENGEEAVIQVRGALQESDQR 9
            VE C NG+EA  +V  +L  SDQ+
Sbjct: 892  VEVCTNGKEAFDEVSKSL--SDQK 913


Top