BLASTX nr result

ID: Coptis23_contig00037218 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00037218
         (524 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAN79131.1| hypothetical protein VITISV_034693 [Vitis vinifera]    55   8e-06

>emb|CAN79131.1| hypothetical protein VITISV_034693 [Vitis vinifera]
          Length = 558

 Score = 54.7 bits (130), Expect = 8e-06
 Identities = 33/104 (31%), Positives = 44/104 (42%), Gaps = 23/104 (22%)
 Frame = -3

Query: 474 LFAELKDECMPIIKVVCMWFEAITELEVNYRKRMVFGLSHIPRFLHMA-DFGCKTHKLPP 298
           +F E K + M  +  +  WFEA + L +N  K  +  +  +   L MA + GCK  KLP 
Sbjct: 449 VFCEAKKDDMTFLSWILCWFEAASXLRINLAKSEIIPVGEVEEILEMAVELGCKVGKLPS 508

Query: 297 NYLGLPLDL----------------------TRDWTFLRRKNCT 232
            YLGLPL                         R + F  RKNCT
Sbjct: 509 TYLGLPLGAPNKAGSVWDGVEERMRWKLALWKRQYIFKGRKNCT 552


Top