BLASTX nr result
ID: Coptis23_contig00037196
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis23_contig00037196
(236 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_003526349.1| PREDICTED: pentatricopeptide repeat-containi... 110 1e-22
ref|XP_004168907.1| PREDICTED: pentatricopeptide repeat-containi... 108 3e-22
ref|XP_004147126.1| PREDICTED: pentatricopeptide repeat-containi... 108 3e-22
emb|CBI40653.3| unnamed protein product [Vitis vinifera] 107 1e-21
ref|XP_002272111.1| PREDICTED: pentatricopeptide repeat-containi... 107 1e-21
>ref|XP_003526349.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g11290-like [Glycine max]
Length = 816
Score = 110 bits (275), Expect = 1e-22
Identities = 49/78 (62%), Positives = 66/78 (84%)
Frame = +2
Query: 2 GDCSNLRMGKLLHGDLVVNGFRSNLYAMTAVSNMYAKCRCIDDCRKMFDRMPQRDVVAWN 181
G+ +LR G+ +HG ++ NGF+SNL+AMTAV N+YAKCR I+D KMF+RMPQRD+V+WN
Sbjct: 153 GENLDLRRGREIHGMVITNGFQSNLFAMTAVVNLYAKCRQIEDAYKMFERMPQRDLVSWN 212
Query: 182 AIVAGYAQNGLARRALKL 235
+VAGYAQNG ARRA+++
Sbjct: 213 TVVAGYAQNGFARRAVQV 230
Score = 64.3 bits (155), Expect = 1e-08
Identities = 31/77 (40%), Positives = 43/77 (55%)
Frame = +2
Query: 5 DCSNLRMGKLLHGDLVVNGFRSNLYAMTAVSNMYAKCRCIDDCRKMFDRMPQRDVVAWNA 184
D S R K +HG + N++ TA+ + +AKC I RK+FD M +R V+ WNA
Sbjct: 457 DLSVTRQAKWIHGLAIRTLMDKNVFVCTALIDTHAKCGAIQTARKLFDLMQERHVITWNA 516
Query: 185 IVAGYAQNGLARRALKL 235
++ GY NG R AL L
Sbjct: 517 MIDGYGTNGHGREALDL 533
Score = 57.4 bits (137), Expect = 1e-06
Identities = 28/74 (37%), Positives = 41/74 (55%)
Frame = +2
Query: 5 DCSNLRMGKLLHGDLVVNGFRSNLYAMTAVSNMYAKCRCIDDCRKMFDRMPQRDVVAWNA 184
D LR+G+ +HG GF + TA+ + Y KC + R +F M R+VV+WN
Sbjct: 255 DLKALRIGRSIHGYAFRAGFEYMVNVATAMLDTYFKCGSVRSARLVFKGMSSRNVVSWNT 314
Query: 185 IVAGYAQNGLARRA 226
++ GYAQNG + A
Sbjct: 315 MIDGYAQNGESEEA 328
Score = 54.7 bits (130), Expect = 8e-06
Identities = 27/79 (34%), Positives = 43/79 (54%), Gaps = 3/79 (3%)
Frame = +2
Query: 8 CSNL---RMGKLLHGDLVVNGFRSNLYAMTAVSNMYAKCRCIDDCRKMFDRMPQRDVVAW 178
C+NL G+ +H L ++ M ++ +MY+KC+ +D +F + + VV W
Sbjct: 354 CANLGDLERGRYVHRLLDEKKIGFDVSVMNSLISMYSKCKRVDIAASVFGNLKHKTVVTW 413
Query: 179 NAIVAGYAQNGLARRALKL 235
NA++ GYAQNG AL L
Sbjct: 414 NAMILGYAQNGCVNEALNL 432
>ref|XP_004168907.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g11290-like [Cucumis sativus]
Length = 821
Score = 108 bits (271), Expect = 3e-22
Identities = 47/78 (60%), Positives = 64/78 (82%)
Frame = +2
Query: 2 GDCSNLRMGKLLHGDLVVNGFRSNLYAMTAVSNMYAKCRCIDDCRKMFDRMPQRDVVAWN 181
GD ++L+ GK +HG L+ N F +N++AMT V NMYAKCR IDD KMFDRMP+RD+V+WN
Sbjct: 158 GDNADLKRGKEIHGQLITNSFAANVFAMTGVVNMYAKCRQIDDAYKMFDRMPERDLVSWN 217
Query: 182 AIVAGYAQNGLARRALKL 235
I+AG++QNG A++AL+L
Sbjct: 218 TIIAGFSQNGFAKKALEL 235
Score = 64.7 bits (156), Expect = 7e-09
Identities = 30/77 (38%), Positives = 46/77 (59%)
Frame = +2
Query: 5 DCSNLRMGKLLHGDLVVNGFRSNLYAMTAVSNMYAKCRCIDDCRKMFDRMPQRDVVAWNA 184
+ S R K +HG ++ + N++ TA+ +MY+KC I RK+FD + R V+ WNA
Sbjct: 462 ELSVTRHAKWIHGLIIRSCLDKNIFVTTALVDMYSKCGAIHMARKLFDMISDRHVITWNA 521
Query: 185 IVAGYAQNGLARRALKL 235
++ GY +GL R AL L
Sbjct: 522 MIDGYGTHGLGRAALDL 538
Score = 64.3 bits (155), Expect = 1e-08
Identities = 29/75 (38%), Positives = 47/75 (62%)
Frame = +2
Query: 5 DCSNLRMGKLLHGDLVVNGFRSNLYAMTAVSNMYAKCRCIDDCRKMFDRMPQRDVVAWNA 184
D L +GK +HG + GF + TA+++MY+KC ++ R +FD M Q+ VV+WN+
Sbjct: 260 DVGLLMVGKSIHGYAIRAGFAKLVNISTALADMYSKCGSVETARLIFDGMDQKTVVSWNS 319
Query: 185 IVAGYAQNGLARRAL 229
++ GY QNG +A+
Sbjct: 320 MMDGYVQNGEPEKAI 334
Score = 55.1 bits (131), Expect = 6e-06
Identities = 26/75 (34%), Positives = 43/75 (57%)
Frame = +2
Query: 5 DCSNLRMGKLLHGDLVVNGFRSNLYAMTAVSNMYAKCRCIDDCRKMFDRMPQRDVVAWNA 184
D +L GK +H + S++ M ++ +MY+KC+ +D +F+ + R V+WNA
Sbjct: 361 DLGDLERGKFVHKFVDQLNLGSDISVMNSLISMYSKCKRVDIASDIFNNLNGRTHVSWNA 420
Query: 185 IVAGYAQNGLARRAL 229
++ GYAQNG AL
Sbjct: 421 MILGYAQNGRVSEAL 435
>ref|XP_004147126.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g11290-like [Cucumis sativus]
Length = 821
Score = 108 bits (271), Expect = 3e-22
Identities = 47/78 (60%), Positives = 64/78 (82%)
Frame = +2
Query: 2 GDCSNLRMGKLLHGDLVVNGFRSNLYAMTAVSNMYAKCRCIDDCRKMFDRMPQRDVVAWN 181
GD ++L+ GK +HG L+ N F +N++AMT V NMYAKCR IDD KMFDRMP+RD+V+WN
Sbjct: 158 GDNADLKRGKEIHGQLITNSFAANVFAMTGVVNMYAKCRQIDDAYKMFDRMPERDLVSWN 217
Query: 182 AIVAGYAQNGLARRALKL 235
I+AG++QNG A++AL+L
Sbjct: 218 TIIAGFSQNGFAKKALEL 235
Score = 64.7 bits (156), Expect = 7e-09
Identities = 30/77 (38%), Positives = 46/77 (59%)
Frame = +2
Query: 5 DCSNLRMGKLLHGDLVVNGFRSNLYAMTAVSNMYAKCRCIDDCRKMFDRMPQRDVVAWNA 184
+ S R K +HG ++ + N++ TA+ +MY+KC I RK+FD + R V+ WNA
Sbjct: 462 ELSVTRHAKWIHGLIIRSCLDKNIFVTTALVDMYSKCGAIHMARKLFDMISDRHVITWNA 521
Query: 185 IVAGYAQNGLARRALKL 235
++ GY +GL R AL L
Sbjct: 522 MIDGYGTHGLGRAALDL 538
Score = 64.3 bits (155), Expect = 1e-08
Identities = 29/75 (38%), Positives = 47/75 (62%)
Frame = +2
Query: 5 DCSNLRMGKLLHGDLVVNGFRSNLYAMTAVSNMYAKCRCIDDCRKMFDRMPQRDVVAWNA 184
D L +GK +HG + GF + TA+++MY+KC ++ R +FD M Q+ VV+WN+
Sbjct: 260 DVGLLMVGKSIHGYAIRAGFAKLVNISTALADMYSKCGSVETARLIFDGMDQKTVVSWNS 319
Query: 185 IVAGYAQNGLARRAL 229
++ GY QNG +A+
Sbjct: 320 MMDGYVQNGEPEKAI 334
Score = 55.1 bits (131), Expect = 6e-06
Identities = 26/75 (34%), Positives = 43/75 (57%)
Frame = +2
Query: 5 DCSNLRMGKLLHGDLVVNGFRSNLYAMTAVSNMYAKCRCIDDCRKMFDRMPQRDVVAWNA 184
D +L GK +H + S++ M ++ +MY+KC+ +D +F+ + R V+WNA
Sbjct: 361 DLGDLERGKFVHKFVDQLNLGSDISVMNSLISMYSKCKRVDIASDIFNNLNGRTHVSWNA 420
Query: 185 IVAGYAQNGLARRAL 229
++ GYAQNG AL
Sbjct: 421 MILGYAQNGRVSEAL 435
>emb|CBI40653.3| unnamed protein product [Vitis vinifera]
Length = 597
Score = 107 bits (267), Expect = 1e-21
Identities = 47/78 (60%), Positives = 62/78 (79%)
Frame = +2
Query: 2 GDCSNLRMGKLLHGDLVVNGFRSNLYAMTAVSNMYAKCRCIDDCRKMFDRMPQRDVVAWN 181
GD ++LR GK +H L+VNGF SN++AMT V NMYAKCR +++ KMFDRMP+RD+V WN
Sbjct: 192 GDNADLRKGKEIHCQLIVNGFASNVFAMTGVVNMYAKCRLVEEAYKMFDRMPERDLVCWN 251
Query: 182 AIVAGYAQNGLARRALKL 235
I++GYAQNG + AL+L
Sbjct: 252 TIISGYAQNGFGKTALEL 269
>ref|XP_002272111.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g11290-like [Vitis vinifera]
Length = 849
Score = 107 bits (267), Expect = 1e-21
Identities = 47/78 (60%), Positives = 62/78 (79%)
Frame = +2
Query: 2 GDCSNLRMGKLLHGDLVVNGFRSNLYAMTAVSNMYAKCRCIDDCRKMFDRMPQRDVVAWN 181
GD ++LR GK +H L+VNGF SN++AMT V NMYAKCR +++ KMFDRMP+RD+V WN
Sbjct: 186 GDNADLRKGKEIHCQLIVNGFASNVFAMTGVVNMYAKCRLVEEAYKMFDRMPERDLVCWN 245
Query: 182 AIVAGYAQNGLARRALKL 235
I++GYAQNG + AL+L
Sbjct: 246 TIISGYAQNGFGKTALEL 263
Score = 65.9 bits (159), Expect = 3e-09
Identities = 30/77 (38%), Positives = 46/77 (59%)
Frame = +2
Query: 5 DCSNLRMGKLLHGDLVVNGFRSNLYAMTAVSNMYAKCRCIDDCRKMFDRMPQRDVVAWNA 184
+ S L K +HG ++ N++ TA+ +MYAKC + RK+FD M +R V WNA
Sbjct: 490 ELSVLPQAKWIHGLVIRTCLDKNVFVATALVDMYAKCGAVHTARKLFDMMDERHVTTWNA 549
Query: 185 IVAGYAQNGLARRALKL 235
++ GY +GL + AL+L
Sbjct: 550 MIDGYGTHGLGKAALEL 566
Score = 65.5 bits (158), Expect = 4e-09
Identities = 30/77 (38%), Positives = 49/77 (63%)
Frame = +2
Query: 5 DCSNLRMGKLLHGDLVVNGFRSNLYAMTAVSNMYAKCRCIDDCRKMFDRMPQRDVVAWNA 184
D +LR+G+ +HG + GF S + TA+ +MY+KC + R +FDRM + VV+WN+
Sbjct: 288 DVGSLRIGRSIHGYSMRAGFESFVNVSTALVDMYSKCGSVGTARLIFDRMTGKTVVSWNS 347
Query: 185 IVAGYAQNGLARRALKL 235
++ GY QNG A+++
Sbjct: 348 MIDGYVQNGDPGAAMEI 364
Score = 54.7 bits (130), Expect = 8e-06
Identities = 23/75 (30%), Positives = 45/75 (60%)
Frame = +2
Query: 5 DCSNLRMGKLLHGDLVVNGFRSNLYAMTAVSNMYAKCRCIDDCRKMFDRMPQRDVVAWNA 184
D ++ G+ +H L S++ M ++ +MY+KC+ +D ++F+ + + +V+WNA
Sbjct: 389 DLGDVEQGRFVHKLLDQLELGSDVSVMNSLISMYSKCKRVDIAAEIFENLQHKTLVSWNA 448
Query: 185 IVAGYAQNGLARRAL 229
++ GYAQNG A+
Sbjct: 449 MILGYAQNGRINEAI 463