BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00037034
         (366 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_683275.2| transcription initiation factor TFIIH subunit H...   185   4e-45
ref|XP_002892263.1| ATGTF2H2/GTF2H2 [Arabidopsis lyrata subsp. l...   185   4e-45
emb|CBI16283.3| unnamed protein product [Vitis vinifera]              185   4e-45
ref|XP_002284994.1| PREDICTED: general transcription factor IIH ...   185   4e-45
ref|XP_003624959.1| General transcription factor IIH subunit [Me...   184   8e-45

>ref|NP_683275.2| transcription initiation factor TFIIH subunit H2 [Arabidopsis
           thaliana] gi|22087278|gb|AAM90909.1|AF499443_1
           p44/SSL1-like protein [Arabidopsis thaliana]
           gi|4056421|gb|AAC97995.1| Similar to gb|Z30094 basic
           transcripion factor 2, 44 kD subunit from Homo sapiens.
           EST gb|W43325 comes from this gene [Arabidopsis
           thaliana] gi|110738828|dbj|BAF01337.1| putative
           transcription factor [Arabidopsis thaliana]
           gi|332189663|gb|AEE27784.1| transcription initiation
           factor TFIIH subunit H2 [Arabidopsis thaliana]
          Length = 421

 Score =  185 bits (469), Expect = 4e-45
 Identities = 91/121 (75%), Positives = 101/121 (83%)
 Frame = -3

Query: 364 WESLQEDESGLLRPIDTDSLHHAQYXXXXXXXXXXXXXXRIQKGLIRYLYIVIDFSRAAA 185
           WE LQEDESGLLRPID  +++HAQY              RIQKGLIRYLYIVIDFSRAAA
Sbjct: 36  WEELQEDESGLLRPIDNSAIYHAQYRRRLRMLSAAAAGTRIQKGLIRYLYIVIDFSRAAA 95

Query: 184 EMDFRPSRMVVVAKHVEAFIREFFDQNPLSHVGLISIKDGVAHCLTDLGGSPDSHIKALM 5
           EMDFRPSRM ++AKHVEAFIREFFDQNPLS +GL+SIK+GVAH LTDLGGSP++HIKALM
Sbjct: 96  EMDFRPSRMAIMAKHVEAFIREFFDQNPLSQIGLVSIKNGVAHTLTDLGGSPETHIKALM 155

Query: 4   G 2
           G
Sbjct: 156 G 156


>ref|XP_002892263.1| ATGTF2H2/GTF2H2 [Arabidopsis lyrata subsp. lyrata]
           gi|297338105|gb|EFH68522.1| ATGTF2H2/GTF2H2 [Arabidopsis
           lyrata subsp. lyrata]
          Length = 421

 Score =  185 bits (469), Expect = 4e-45
 Identities = 91/121 (75%), Positives = 101/121 (83%)
 Frame = -3

Query: 364 WESLQEDESGLLRPIDTDSLHHAQYXXXXXXXXXXXXXXRIQKGLIRYLYIVIDFSRAAA 185
           WE LQEDESGLLRPID  +++HAQY              RIQKGLIRYLYIVIDFSRAAA
Sbjct: 36  WEELQEDESGLLRPIDNSAIYHAQYRRRLRMLSAAAAGTRIQKGLIRYLYIVIDFSRAAA 95

Query: 184 EMDFRPSRMVVVAKHVEAFIREFFDQNPLSHVGLISIKDGVAHCLTDLGGSPDSHIKALM 5
           EMDFRPSRM ++AKHVEAFIREFFDQNPLS +GL+SIK+GVAH LTDLGGSP++HIKALM
Sbjct: 96  EMDFRPSRMAIMAKHVEAFIREFFDQNPLSQIGLVSIKNGVAHTLTDLGGSPETHIKALM 155

Query: 4   G 2
           G
Sbjct: 156 G 156


>emb|CBI16283.3| unnamed protein product [Vitis vinifera]
          Length = 494

 Score =  185 bits (469), Expect = 4e-45
 Identities = 89/121 (73%), Positives = 101/121 (83%)
 Frame = -3

Query: 364 WESLQEDESGLLRPIDTDSLHHAQYXXXXXXXXXXXXXXRIQKGLIRYLYIVIDFSRAAA 185
           WESLQEDESGLLRPID  +++HAQY              RIQKGLIRYLYIV+D SRAA+
Sbjct: 110 WESLQEDESGLLRPIDNKTIYHAQYRRRIRSLYSSTTTARIQKGLIRYLYIVVDLSRAAS 169

Query: 184 EMDFRPSRMVVVAKHVEAFIREFFDQNPLSHVGLISIKDGVAHCLTDLGGSPDSHIKALM 5
           EMDF+PSRM VVAKH+EAFIREFFDQNPLS +GL++IKDG+A CLTDLGGSPDSH+KALM
Sbjct: 170 EMDFKPSRMAVVAKHIEAFIREFFDQNPLSQIGLVTIKDGLAQCLTDLGGSPDSHVKALM 229

Query: 4   G 2
           G
Sbjct: 230 G 230


>ref|XP_002284994.1| PREDICTED: general transcription factor IIH subunit 2 [Vitis
           vinifera]
          Length = 433

 Score =  185 bits (469), Expect = 4e-45
 Identities = 89/121 (73%), Positives = 101/121 (83%)
 Frame = -3

Query: 364 WESLQEDESGLLRPIDTDSLHHAQYXXXXXXXXXXXXXXRIQKGLIRYLYIVIDFSRAAA 185
           WESLQEDESGLLRPID  +++HAQY              RIQKGLIRYLYIV+D SRAA+
Sbjct: 49  WESLQEDESGLLRPIDNKTIYHAQYRRRIRSLYSSTTTARIQKGLIRYLYIVVDLSRAAS 108

Query: 184 EMDFRPSRMVVVAKHVEAFIREFFDQNPLSHVGLISIKDGVAHCLTDLGGSPDSHIKALM 5
           EMDF+PSRM VVAKH+EAFIREFFDQNPLS +GL++IKDG+A CLTDLGGSPDSH+KALM
Sbjct: 109 EMDFKPSRMAVVAKHIEAFIREFFDQNPLSQIGLVTIKDGLAQCLTDLGGSPDSHVKALM 168

Query: 4   G 2
           G
Sbjct: 169 G 169


>ref|XP_003624959.1| General transcription factor IIH subunit [Medicago truncatula]
           gi|355499974|gb|AES81177.1| General transcription factor
           IIH subunit [Medicago truncatula]
          Length = 426

 Score =  184 bits (466), Expect = 8e-45
 Identities = 90/121 (74%), Positives = 100/121 (82%)
 Frame = -3

Query: 364 WESLQEDESGLLRPIDTDSLHHAQYXXXXXXXXXXXXXXRIQKGLIRYLYIVIDFSRAAA 185
           WESLQEDESGLLRPIDT ++HHAQY              RIQKGLIRYLYIV+D S+AA+
Sbjct: 39  WESLQEDESGLLRPIDTTAIHHAQYRRRLRALASNAATARIQKGLIRYLYIVVDLSKAAS 98

Query: 184 EMDFRPSRMVVVAKHVEAFIREFFDQNPLSHVGLISIKDGVAHCLTDLGGSPDSHIKALM 5
           E DFRPSRM V+AK VE FIREFFDQNPLSHVGL++ KDGVA+CLTDLGGSP+SHIKALM
Sbjct: 99  ERDFRPSRMAVIAKQVELFIREFFDQNPLSHVGLVTTKDGVANCLTDLGGSPESHIKALM 158

Query: 4   G 2
           G
Sbjct: 159 G 159