BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00037026
         (305 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003621614.1| DNA-directed RNA polymerase III subunit RPC6...    68   9e-10
ref|NP_189164.1| Ribonuclease H-like protein [Arabidopsis thalia...    61   1e-07
gb|AEJ07916.1| putative ZmL1 non-LTR retrotransposon protein [Ze...    60   2e-07
gb|AAF18538.1|AC006551_24 Very similar to retrotransposon revers...    59   3e-07
ref|XP_002520645.1| conserved hypothetical protein [Ricinus comm...    58   7e-07

>ref|XP_003621614.1| DNA-directed RNA polymerase III subunit RPC6 [Medicago truncatula]
           gi|355496629|gb|AES77832.1| DNA-directed RNA polymerase
           III subunit RPC6 [Medicago truncatula]
          Length = 456

 Score = 67.8 bits (164), Expect = 9e-10
 Identities = 33/71 (46%), Positives = 41/71 (57%)
 Frame = -2

Query: 286 KAIWKAPVSANIVLFLWKLYMGILPTGDLLRRRGIKGEFSCPLCWMALEDPMHIFFKCEW 107
           K IWK P+   +  F+WKL   I+PT   LRRRG+  +  CPLC+ A E   H F  C  
Sbjct: 261 KLIWKLPLPTRVRNFMWKLARNIIPTRCNLRRRGVVLDTVCPLCFDADESSNHRFMACPM 320

Query: 106 SKSVWFASNLG 74
           +  VWFAS LG
Sbjct: 321 TLQVWFASPLG 331


>ref|NP_189164.1| Ribonuclease H-like protein [Arabidopsis thaliana]
           gi|9294184|dbj|BAB02086.1| reverse transcriptase-like
           protein [Arabidopsis thaliana]
           gi|332643482|gb|AEE77003.1| Ribonuclease H-like protein
           [Arabidopsis thaliana]
          Length = 343

 Score = 60.8 bits (146), Expect = 1e-07
 Identities = 29/68 (42%), Positives = 37/68 (54%)
 Frame = -2

Query: 280 IWKAPVSANIVLFLWKLYMGILPTGDLLRRRGIKGEFSCPLCWMALEDPMHIFFKCEWSK 101
           IWK   +  I  FLWKL  G L TGD L+RR I+    C  C    E   H+FF C +++
Sbjct: 18  IWKLKTAPKIKHFLWKLLSGALATGDNLKRRHIRNHPQCHRCCQEDETSQHLFFDCFYAQ 77

Query: 100 SVWFASNL 77
            VW AS +
Sbjct: 78  QVWRASGI 85


>gb|AEJ07916.1| putative ZmL1 non-LTR retrotransposon protein [Zea mays]
          Length = 472

 Score = 59.7 bits (143), Expect = 2e-07
 Identities = 29/68 (42%), Positives = 38/68 (55%)
 Frame = -2

Query: 295 NTVKAIWKAPVSANIVLFLWKLYMGILPTGDLLRRRGIKGEFSCPLCWMALEDPMHIFFK 116
           N  K+IW   V+  I +FLW+L     P    + RRGIK E  CP+C+   ED  H+F K
Sbjct: 149 NVWKSIWNVNVTNKIKMFLWRLAHNSHPVRVNIARRGIKIETLCPMCFRLDEDGGHLFLK 208

Query: 115 CEWSKSVW 92
           C+  K VW
Sbjct: 209 CKKVKQVW 216


>gb|AAF18538.1|AC006551_24 Very similar to retrotransposon reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1231

 Score = 59.3 bits (142), Expect = 3e-07
 Identities = 27/76 (35%), Positives = 40/76 (52%), Gaps = 1/76 (1%)
 Frame = -2

Query: 301  NINTVKA-IWKAPVSANIVLFLWKLYMGILPTGDLLRRRGIKGEFSCPLCWMALEDPMHI 125
            ++N +K  +WK      I +FLWK+  G +P  DLL  RG+K +  C  C    E   H+
Sbjct: 886  SLNDLKTQVWKLQTEPKIKVFLWKVLSGAIPVVDLLSYRGMKLDSRCQTCGCEGESIQHV 945

Query: 124  FFKCEWSKSVWFASNL 77
             F C + + VW  SN+
Sbjct: 946  LFSCSFPRQVWAMSNI 961


>ref|XP_002520645.1| conserved hypothetical protein [Ricinus communis]
           gi|223540165|gb|EEF41741.1| conserved hypothetical
           protein [Ricinus communis]
          Length = 160

 Score = 58.2 bits (139), Expect = 7e-07
 Identities = 26/67 (38%), Positives = 36/67 (53%)
 Frame = -2

Query: 223 GILPTGDLLRRRGIKGEFSCPLCWMALEDPMHIFFKCEWSKSVWFASNLGGKLDKLGHYT 44
           G LPT D+L  RG+     C  C   +E  M++F  C W+K +WF S LG ++D L    
Sbjct: 26  GTLPTADVLSHRGLNCSQLCLRCGQNVETTMYVFKDCVWAKGIWFGSPLGMRVDDLMVCN 85

Query: 43  IRDWVDL 23
           + DW  L
Sbjct: 86  LEDWTRL 92