BLASTX nr result

ID: Coptis23_contig00037017 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00037017
         (255 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002307734.1| predicted protein [Populus trichocarpa] gi|2...    64   1e-08

>ref|XP_002307734.1| predicted protein [Populus trichocarpa]
           gi|224144099|ref|XP_002336108.1| predicted protein
           [Populus trichocarpa] gi|222857183|gb|EEE94730.1|
           predicted protein [Populus trichocarpa]
           gi|222872880|gb|EEF10011.1| predicted protein [Populus
           trichocarpa]
          Length = 973

 Score = 63.9 bits (154), Expect = 1e-08
 Identities = 38/85 (44%), Positives = 52/85 (61%), Gaps = 4/85 (4%)
 Frame = -1

Query: 243 MKTSLLHPLFYISLIFSISTSQTDLEVLKKLKTSL---GSSELEDWTFXXXXXXXXS-FT 76
           M+T L   L  + L+F+  +  +DLEVL KLKTS+     + L+DW            F+
Sbjct: 1   MRTFLCFFLLLV-LLFAPCSGYSDLEVLLKLKTSMYGHNGTGLQDWVASPASPTAHCYFS 59

Query: 75  GILCDENSRVISLNISFRSFPGSIP 1
           G+ CDE+SRV+SLN+SFR  PGSIP
Sbjct: 60  GVTCDEDSRVVSLNVSFRHLPGSIP 84


Top