BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00036978
         (423 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004144572.1| PREDICTED: 5' exonuclease Apollo-like [Cucum...    95   7e-18
ref|XP_002272846.1| PREDICTED: 5' exonuclease Apollo [Vitis vini...    90   2e-16
ref|XP_002522720.1| DNA cross-link repair protein pso2/snm1, put...    86   2e-15
ref|XP_003540866.1| PREDICTED: 5' exonuclease Apollo-like [Glyci...    77   1e-12
ref|XP_002890726.1| hypothetical protein ARALYDRAFT_472944 [Arab...    76   3e-12

>ref|XP_004144572.1| PREDICTED: 5' exonuclease Apollo-like [Cucumis sativus]
           gi|449493187|ref|XP_004159216.1| PREDICTED: 5'
           exonuclease Apollo-like [Cucumis sativus]
          Length = 428

 Score = 94.7 bits (234), Expect = 7e-18
 Identities = 49/111 (44%), Positives = 67/111 (60%)
 Frame = +3

Query: 3   RPFEENGCSLGSSHFIFHDRSKITNSSDIAHRSQQAEVSGSVRKFHHCIYSVPYSDHSCF 182
           RP E +G   GS     + +SK+  +       Q  +V  SV K H  I+SVPYSDH+CF
Sbjct: 267 RPHEGDGIPSGSLLITRYRQSKLNENGPFLIEKQTGKVE-SVTKLHKYIFSVPYSDHACF 325

Query: 183 NELQEFVNLLQPLTMKGIVSSSSCDTDPHNFLGNLCGLKQTIEQSSKKFQR 335
           +E+QEF+ L+ P T+KGIVSSSSC  +P  + G LCG KQ + +   K +R
Sbjct: 326 SEIQEFIKLICPTTIKGIVSSSSCYIEPLYYFGRLCGAKQPVNKFHHKKER 376


>ref|XP_002272846.1| PREDICTED: 5' exonuclease Apollo [Vitis vinifera]
           gi|296081253|emb|CBI17997.3| unnamed protein product
           [Vitis vinifera]
          Length = 435

 Score = 89.7 bits (221), Expect = 2e-16
 Identities = 51/137 (37%), Positives = 78/137 (56%), Gaps = 1/137 (0%)
 Frame = +3

Query: 3   RPFEENGCSLGSSHFIFHDRSK-ITNSSDIAHRSQQAEVSGSVRKFHHCIYSVPYSDHSC 179
           +P E N    G      H  +K I N    A  +++ ++   VR FH  IYSVPYS+HSC
Sbjct: 267 KPSEGNDNPAGPPSISHHCGNKRIINGGPRAEINKKGKLRSVVR-FHQYIYSVPYSEHSC 325

Query: 180 FNELQEFVNLLQPLTMKGIVSSSSCDTDPHNFLGNLCGLKQTIEQSSKKFQRRKVNGNAE 359
           F E+++F+ L+QP+ +KGIVSSS C  +P  + G LCG+  + ++  +K +RR+   N E
Sbjct: 326 FPEIEDFIKLVQPINIKGIVSSSFCYIEPLYYFGGLCGVNPSSQRLPRKSERREKYENIE 385

Query: 360 TVQVKPVTGSDKSVDVK 410
             + K  +GS    D +
Sbjct: 386 -AKTKSNSGSSNFTDAE 401


>ref|XP_002522720.1| DNA cross-link repair protein pso2/snm1, putative [Ricinus
           communis] gi|223538070|gb|EEF39682.1| DNA cross-link
           repair protein pso2/snm1, putative [Ricinus communis]
          Length = 427

 Score = 86.3 bits (212), Expect = 2e-15
 Identities = 38/74 (51%), Positives = 54/74 (72%)
 Frame = +3

Query: 123 SVRKFHHCIYSVPYSDHSCFNELQEFVNLLQPLTMKGIVSSSSCDTDPHNFLGNLCGLKQ 302
           SV + H  IYSVPYSDHSCF+E+QEF+ L+QP +MKGIVSSSSC  +P  + G LC    
Sbjct: 306 SVERLHQYIYSVPYSDHSCFSEIQEFIELVQPTSMKGIVSSSSCYINPVYYFGRLCRENW 365

Query: 303 TIEQSSKKFQRRKV 344
           + ++   K+++++V
Sbjct: 366 SAQRMRDKYEKKEV 379


>ref|XP_003540866.1| PREDICTED: 5' exonuclease Apollo-like [Glycine max]
          Length = 437

 Score = 77.0 bits (188), Expect = 1e-12
 Identities = 44/116 (37%), Positives = 67/116 (57%)
 Frame = +3

Query: 12  EENGCSLGSSHFIFHDRSKITNSSDIAHRSQQAEVSGSVRKFHHCIYSVPYSDHSCFNEL 191
           ++N    GS     + R K++ +++     +Q   +GS  K H  IY+VPYSDHS + E+
Sbjct: 265 QKNELQTGSFLTSRYKRGKLSANTE-TQIDKQIVKTGSPEKIHKYIYTVPYSDHSNYEEI 323

Query: 192 QEFVNLLQPLTMKGIVSSSSCDTDPHNFLGNLCGLKQTIEQSSKKFQRRKVNGNAE 359
           ++FV L++P T+KGIVSSSSC  +P  + G LC   Q  +Q  +   + K NG  E
Sbjct: 324 EDFVKLVKPTTLKGIVSSSSCYIEPMYYFGRLCPGNQQTDQVHEGC-KGKENGKRE 378


>ref|XP_002890726.1| hypothetical protein ARALYDRAFT_472944 [Arabidopsis lyrata subsp.
           lyrata] gi|297336568|gb|EFH66985.1| hypothetical protein
           ARALYDRAFT_472944 [Arabidopsis lyrata subsp. lyrata]
          Length = 422

 Score = 76.3 bits (186), Expect = 3e-12
 Identities = 39/107 (36%), Positives = 62/107 (57%)
 Frame = +3

Query: 99  SQQAEVSGSVRKFHHCIYSVPYSDHSCFNELQEFVNLLQPLTMKGIVSSSSCDTDPHNFL 278
           +Q+   + +V KFH  +YSV YSDHSC+ E+ EF+ L++P +MKGIV SSS   DP  + 
Sbjct: 289 AQKELEAAAVHKFHDYMYSVHYSDHSCYEEIGEFIKLVKPKSMKGIVVSSSSYVDPLYYF 348

Query: 279 GNLCGLKQTIEQSSKKFQRRKVNGNAETVQVKPVTGSDKSVDVKPER 419
           G +CG  Q          R  +    + V++K  + +DK+  ++ E+
Sbjct: 349 GRICGANQ---PPQVLLMRPDIADEFQAVRIKSYSATDKTRVLEKEK 392