BLASTX nr result

ID: Coptis23_contig00036904 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00036904
         (621 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002298342.1| predicted protein [Populus trichocarpa] gi|2...    84   2e-14
ref|XP_002283174.1| PREDICTED: uncharacterized protein LOC100248...    82   6e-14
ref|XP_004143129.1| PREDICTED: uncharacterized protein LOC101205...    78   1e-12
ref|XP_002520535.1| conserved hypothetical protein [Ricinus comm...    69   7e-10
ref|XP_002879205.1| hypothetical protein ARALYDRAFT_901879 [Arab...    68   2e-09

>ref|XP_002298342.1| predicted protein [Populus trichocarpa] gi|222845600|gb|EEE83147.1|
           predicted protein [Populus trichocarpa]
          Length = 202

 Score = 84.3 bits (207), Expect = 2e-14
 Identities = 43/94 (45%), Positives = 63/94 (67%), Gaps = 1/94 (1%)
 Frame = +1

Query: 112 TSISILPTSLYSHKTKLTKFPPQKTSHKVWRVSVGTEDVLPLES-PIETTQEVISANSGD 288
           TS   L   L S +T L K    + S ++W++    E+VLP ++ P+E+TQ+++S  + D
Sbjct: 64  TSPLSLSNPLPSKRTVLYKQEIHRRSTQIWKIKATPEEVLPSDTTPLESTQQMLSTTNDD 123

Query: 289 GVSNIISVLLFIAFLGLSILTVGVVYIAVTDFLQ 390
           GV  IIS LLF+AF  LSILT+G++Y+ VTDFLQ
Sbjct: 124 GVGTIISALLFVAFAALSILTIGIIYLGVTDFLQ 157


>ref|XP_002283174.1| PREDICTED: uncharacterized protein LOC100248460 [Vitis vinifera]
           gi|297746039|emb|CBI16095.3| unnamed protein product
           [Vitis vinifera]
          Length = 175

 Score = 82.4 bits (202), Expect = 6e-14
 Identities = 53/137 (38%), Positives = 77/137 (56%), Gaps = 24/137 (17%)
 Frame = +1

Query: 52  SSSISLSLKPLTSTSFLKKATSISILPTSLYSHKTKLTKFP------------------- 174
           S+S+  SL PL   S           P SL+ H + L   P                   
Sbjct: 3   SASVCGSLSPLPFPSIFNSKP-----PNSLHIHNSSLPFIPLLALRTTTPRKKTINFHHP 57

Query: 175 ----PQKTSHKVWRVSVGTEDVLPLE-SPIETTQEVISANSGDGVSNIISVLLFIAFLGL 339
               PQK++ ++WR+S  +ED LP E +P+E +Q+++S  S +GVS +IS LLF+AF+ L
Sbjct: 58  PHAIPQKST-QLWRISAVSEDALPSEVTPLENSQQIVST-SDEGVSTVISALLFVAFVAL 115

Query: 340 SILTVGVVYIAVTDFLQ 390
           +ILT+GV+YIAV+DFLQ
Sbjct: 116 TILTIGVIYIAVSDFLQ 132


>ref|XP_004143129.1| PREDICTED: uncharacterized protein LOC101205908 [Cucumis sativus]
           gi|449496669|ref|XP_004160194.1| PREDICTED:
           uncharacterized protein LOC101223634 [Cucumis sativus]
          Length = 176

 Score = 77.8 bits (190), Expect = 1e-12
 Identities = 55/129 (42%), Positives = 76/129 (58%), Gaps = 13/129 (10%)
 Frame = +1

Query: 43  MAVSSSISLSLK-PLTSTSFLKKATSISILP----TSLYSHKTKLTKFPPQKTSHKVWRV 207
           MA ++ ISLSL   L+S++ L    S S  P    T+L+S  T     P ++   K   +
Sbjct: 1   MASTTFISLSLPISLSSSNLLPTLRSSSSPPFPFSTALFSRPTLPLLNPLRQNRQKQLSI 60

Query: 208 S----VGTEDVLPLESPI----ETTQEVISANSGDGVSNIISVLLFIAFLGLSILTVGVV 363
           S      ++  LP +S      E +QE++ + + DGVS IISVLLF AF+GLSILT+GV+
Sbjct: 61  SRIHAATSQQTLPSDSAALLAAEKSQEIVGSTNDDGVSTIISVLLFTAFIGLSILTIGVI 120

Query: 364 YIAVTDFLQ 390
           YI VTDFLQ
Sbjct: 121 YIGVTDFLQ 129


>ref|XP_002520535.1| conserved hypothetical protein [Ricinus communis]
           gi|223540377|gb|EEF41948.1| conserved hypothetical
           protein [Ricinus communis]
          Length = 168

 Score = 68.9 bits (167), Expect = 7e-10
 Identities = 38/103 (36%), Positives = 54/103 (52%)
 Frame = +1

Query: 193 KVWRVSVGTEDVLPLESPIETTQEVISANSGDGVSNIISVLLFIAFLGLSILTVGVVYIA 372
           ++WR+    E+ LP ++    + + I+A S D  +NIIS+LLFIAF+ L+ILTVGV+Y+ 
Sbjct: 56  QIWRLYAAPEEALPSDTAALESAQKIAATSDDPTANIISLLLFIAFVVLAILTVGVIYLG 115

Query: 373 VTDFLQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPKGFGQK 501
           VTDFL                               P+GFGQK
Sbjct: 116 VTDFLGKREKEKFEKEEAAKKKKKGGKKGKVRARTGPRGFGQK 158


>ref|XP_002879205.1| hypothetical protein ARALYDRAFT_901879 [Arabidopsis lyrata subsp.
           lyrata] gi|297325044|gb|EFH55464.1| hypothetical protein
           ARALYDRAFT_901879 [Arabidopsis lyrata subsp. lyrata]
          Length = 167

 Score = 67.8 bits (164), Expect = 2e-09
 Identities = 51/158 (32%), Positives = 79/158 (50%), Gaps = 5/158 (3%)
 Frame = +1

Query: 43  MAVSSSISLSLKPLTST-SFLKKATSISILPTSLYSHK---TKLTKFPPQKTSHKVWRVS 210
           M+ +++ SLSL   T       K   IS L  S+   K   +++ +   +KT  ++WRVS
Sbjct: 1   MSATTTPSLSLSNFTPRFQHPVKTHHISPLSWSVSRRKILSSRVLRVHKEKT--QLWRVS 58

Query: 211 VGTEDVLP-LESPIETTQEVISANSGDGVSNIISVLLFIAFLGLSILTVGVVYIAVTDFL 387
              E++   + S   +++ ++S+   DGV+ II VLLF+AFL L++LT+GVVYI VT+FL
Sbjct: 59  ATPEEISQEIVSSDSSSEAIVSSGGQDGVALIIQVLLFVAFLALTVLTIGVVYIGVTEFL 118

Query: 388 QXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPKGFGQK 501
                                          P+GFGQK
Sbjct: 119 GKREREKFEKDEAAKKSKKGGKKKAMRAKAGPRGFGQK 156


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