BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00036883
         (454 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAB48351.1| reverse transcriptase, partial [Arabidopsis thali...   157   6e-37
emb|CAB75484.1| putative protein [Arabidopsis thaliana]               153   1e-35
pir||S65821 RNA-directed DNA polymerase (EC 2.7.7.49) (clone NIN...   152   4e-35
ref|XP_002454941.1| hypothetical protein SORBIDRAFT_03g001780 [S...   151   6e-35
emb|CAB39638.1| RNA-directed DNA polymerase-like protein [Arabid...   150   8e-35

>gb|AAB48351.1| reverse transcriptase, partial [Arabidopsis thaliana]
          Length = 199

 Score =  157 bits (398), Expect = 6e-37
 Identities = 76/151 (50%), Positives = 106/151 (70%), Gaps = 1/151 (0%)
 Frame = -3

Query: 452 NITLIPKCELSETLDQFRPISL*NVSLRIITKFLANRFKPLFDKFISPSQSAFVKGRQIF 273
           NI LIPK  +S  +  FRPI+L NVS +II+K L +R K      +S +Q+AF+ GR I 
Sbjct: 44  NICLIPKKNVSTLMADFRPIALCNVSYKIISKTLVDRLKQHLPFIVSENQAAFIGGRNIM 103

Query: 272 DNIVLAHEIVRTLKKKK-GASGCMAIKLDLSKAFDRVEWGFLLETMEALGFCEKWRNWVN 96
           DN+++AHE++ +LKK+K  A+  M +K D++KA+DR+EW FL ETM+++GF   W NWV 
Sbjct: 104 DNVIIAHEMLHSLKKRKLWATSYMTVKTDITKAYDRLEWAFLRETMQSMGFDSVWINWVM 163

Query: 95  QCISTTSLSFKLNGSPTGFLKPERGIRQGDP 3
           QC+ + S S  +N SP G +KPERGIRQG P
Sbjct: 164 QCVESVSFSVLVNASPRGMIKPERGIRQGYP 194


>emb|CAB75484.1| putative protein [Arabidopsis thaliana]
          Length = 851

 Score =  153 bits (387), Expect = 1e-35
 Identities = 73/151 (48%), Positives = 102/151 (67%), Gaps = 1/151 (0%)
 Frame = -3

Query: 452 NITLIPKCELSETLDQFRPISL*NVSLRIITKFLANRFKPLFDKFISPSQSAFVKGRQIF 273
           NI +IPK +  +TL  +RPI+L NV  ++I+K + NR K   +  +S SQ+AF+ GR I 
Sbjct: 109 NICMIPKIQNPQTLSDYRPIALCNVLYKVISKCMVNRLKAHLNSIVSDSQAAFIPGRIIN 168

Query: 272 DNIVLAHEIVRTLKKKKGASGC-MAIKLDLSKAFDRVEWGFLLETMEALGFCEKWRNWVN 96
           DN+++AHEI+ +LK +K  S   MA+K D+SKA+DRVEW FL  TM   GFC+KW  W+ 
Sbjct: 169 DNVMIAHEIMHSLKVRKRVSKTYMAVKTDVSKAYDRVEWDFLETTMRLFGFCDKWIGWIM 228

Query: 95  QCISTTSLSFKLNGSPTGFLKPERGIRQGDP 3
             + +   S  +NGSP G++ P RGIRQGDP
Sbjct: 229 AAVKSVHYSVLINGSPHGYISPTRGIRQGDP 259


>pir||S65821 RNA-directed DNA polymerase (EC 2.7.7.49) (clone NING2) -
           Arabidopsis thaliana retrotransposon Ta14 (fragment)
          Length = 184

 Score =  152 bits (383), Expect = 4e-35
 Identities = 73/147 (49%), Positives = 103/147 (70%), Gaps = 1/147 (0%)
 Frame = -3

Query: 452 NITLIPKCELSETLDQFRPISL*NVSLRIITKFLANRFKPLFDKFISPSQSAFVKGRQIF 273
           NI LIPK  +S  +  FRPI+L NVS +II+K L +R K      +S +Q+AF+ GR I 
Sbjct: 38  NICLIPKKNVSTLMADFRPIALCNVSYKIISKTLVDRLKQHLPFIVSENQAAFIGGRNIM 97

Query: 272 DNIVLAHEIVRTLKKKK-GASGCMAIKLDLSKAFDRVEWGFLLETMEALGFCEKWRNWVN 96
           DN+++AHE++ +LKK+K  A+  M +K D++KA+DR+EW FL ETM+++GF   W NWV 
Sbjct: 98  DNVIIAHEMLHSLKKRKLWATSYMTVKTDITKAYDRLEWAFLRETMQSMGFDSVWINWVM 157

Query: 95  QCISTTSLSFKLNGSPTGFLKPERGIR 15
           QC+ + S S  +N SP G +KPERGIR
Sbjct: 158 QCVESVSFSVLVNASPRGMIKPERGIR 184


>ref|XP_002454941.1| hypothetical protein SORBIDRAFT_03g001780 [Sorghum bicolor]
           gi|241926916|gb|EES00061.1| hypothetical protein
           SORBIDRAFT_03g001780 [Sorghum bicolor]
          Length = 631

 Score =  151 bits (381), Expect = 6e-35
 Identities = 80/150 (53%), Positives = 100/150 (66%), Gaps = 1/150 (0%)
 Frame = -3

Query: 449 ITLIPKCELSETLDQFRPISL*NVSLRIITKFLANRFKPLFDKFISPSQSAFVKGRQIFD 270
           I LIPK    + L   RPISL NV  ++I+K LANR K +    IS SQSAFV GR I D
Sbjct: 70  IVLIPKTNTPQMLKDLRPISLCNVLYKLISKVLANRLKKILPNIISNSQSAFVPGRLITD 129

Query: 269 NIVLAHEIVRTLKK-KKGASGCMAIKLDLSKAFDRVEWGFLLETMEALGFCEKWRNWVNQ 93
           N++LA+EIV  LK  KKGA G  AIKLD+SKA+DRVEW FL   M  +GF EKW   + +
Sbjct: 130 NVLLAYEIVHHLKSIKKGAGGLAAIKLDMSKAYDRVEWSFLENMMRKMGFDEKWVQLIMK 189

Query: 92  CISTTSLSFKLNGSPTGFLKPERGIRQGDP 3
           C++T +   K+N S T  + P+RG+RQGDP
Sbjct: 190 CVTTVTYKIKVNDSYTQKIFPQRGLRQGDP 219


>emb|CAB39638.1| RNA-directed DNA polymerase-like protein [Arabidopsis thaliana]
           gi|7267666|emb|CAB78094.1| RNA-directed DNA
           polymerase-like protein [Arabidopsis thaliana]
          Length = 1274

 Score =  150 bits (380), Expect = 8e-35
 Identities = 73/151 (48%), Positives = 97/151 (64%), Gaps = 1/151 (0%)
 Frame = -3

Query: 452 NITLIPKCELSETLDQFRPISL*NVSLRIITKFLANRFKPLFDKFISPSQSAFVKGRQIF 273
           ++TLIPK      +  +RPI+L NV  +I+ K L  R +P   + IS  QSAFV GR I 
Sbjct: 429 HVTLIPKISAPRKVSDYRPIALCNVQYKIVAKILTRRLQPWLSELISLHQSAFVPGRAIA 488

Query: 272 DNIVLAHEIVRTLKKKKGASGC-MAIKLDLSKAFDRVEWGFLLETMEALGFCEKWRNWVN 96
           DN+++ HEI+  L+       C MAIK D+SKA+DR++W FL E +  LGF +KW  WV 
Sbjct: 489 DNVLITHEILHFLRVSGAKKYCSMAIKTDMSKAYDRIKWNFLQEVLMRLGFHDKWIRWVM 548

Query: 95  QCISTTSLSFKLNGSPTGFLKPERGIRQGDP 3
           QC+ T S SF +NGSP G + P RG+RQGDP
Sbjct: 549 QCVCTVSYSFLINGSPQGSVVPSRGLRQGDP 579