BLASTX nr result
ID: Coptis23_contig00036874
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis23_contig00036874
(375 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002278762.1| PREDICTED: pentatricopeptide repeat-containi... 185 4e-45
ref|XP_002868248.1| pentatricopeptide repeat-containing protein ... 182 3e-44
ref|XP_002315764.1| predicted protein [Populus trichocarpa] gi|2... 181 6e-44
ref|NP_193218.1| pentatricopeptide repeat-containing protein [Ar... 174 5e-42
gb|EEE60540.1| hypothetical protein OsJ_13880 [Oryza sativa Japo... 171 4e-41
>ref|XP_002278762.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14820
[Vitis vinifera] gi|297737070|emb|CBI26271.3| unnamed
protein product [Vitis vinifera]
Length = 727
Score = 185 bits (469), Expect = 4e-45
Identities = 82/124 (66%), Positives = 103/124 (83%)
Frame = -3
Query: 373 NVITWTSIITGFAMHGDAGTALRLFDQMNADGIEPNSVTFVSVLYACSHAGLVDKGLHMF 194
NVI+WT +I+ FAMHGDAG+ALR F QM + IEPN +TFV VLYACSHAGLV++G +F
Sbjct: 420 NVISWTCMISAFAMHGDAGSALRFFHQMEDENIEPNGITFVGVLYACSHAGLVEEGRKIF 479
Query: 193 ALMTNKYNILPKQEHYGCMVDLLGRANFLRESLDLVKSMPFTPNVVVWGSLLSACRVHGD 14
M N++NI PK HYGCMVDL GRAN LRE+L+LV++MP PNV++WGSL++ACRVHG+
Sbjct: 480 YSMINEHNITPKHVHYGCMVDLFGRANLLREALELVEAMPLAPNVIIWGSLMAACRVHGE 539
Query: 13 VELG 2
+ELG
Sbjct: 540 IELG 543
Score = 68.9 bits (167), Expect = 4e-10
Identities = 37/122 (30%), Positives = 67/122 (54%), Gaps = 2/122 (1%)
Frame = -3
Query: 373 NVITWTSIITGFAMHGDAGTALRLFDQMNADGIEPNSVTFVSVLYACSHAGLVD--KGLH 200
+++ W+++I+G+A AL LF++M + GI+P+ VT +SV+ AC+H G +D K +H
Sbjct: 319 DLVCWSAMISGYAESDSPQEALNLFNEMQSLGIKPDQVTMLSVITACAHLGALDQAKWIH 378
Query: 199 MFALMTNKYNILPKQEHYGCMVDLLGRANFLRESLDLVKSMPFTPNVVVWGSLLSACRVH 20
+F LP ++++ + L + + MP NV+ W ++SA +H
Sbjct: 379 LFVDKNGFGGALPIN---NALIEMYAKCGSLERARRIFDKMP-RKNVISWTCMISAFAMH 434
Query: 19 GD 14
GD
Sbjct: 435 GD 436
>ref|XP_002868248.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata] gi|297314084|gb|EFH44507.1|
pentatricopeptide repeat-containing protein [Arabidopsis
lyrata subsp. lyrata]
Length = 725
Score = 182 bits (461), Expect = 3e-44
Identities = 80/124 (64%), Positives = 103/124 (83%)
Frame = -3
Query: 373 NVITWTSIITGFAMHGDAGTALRLFDQMNADGIEPNSVTFVSVLYACSHAGLVDKGLHMF 194
NV++W+S+I FAMHG+A +L LF QM + +EPN VTFV VLY CSH+GLV++G +F
Sbjct: 412 NVVSWSSMINAFAMHGEASDSLSLFAQMKQENVEPNEVTFVGVLYGCSHSGLVEEGKKIF 471
Query: 193 ALMTNKYNILPKQEHYGCMVDLLGRANFLRESLDLVKSMPFTPNVVVWGSLLSACRVHGD 14
A MT++YNI PK EHYGCMVDL GRAN LRE+L++++SMP PNVV+WGSL+SACRVHG+
Sbjct: 472 ASMTDEYNITPKIEHYGCMVDLFGRANLLREALEVIESMPMAPNVVIWGSLMSACRVHGE 531
Query: 13 VELG 2
+ELG
Sbjct: 532 LELG 535
Score = 70.5 bits (171), Expect = 1e-10
Identities = 37/122 (30%), Positives = 71/122 (58%), Gaps = 2/122 (1%)
Frame = -3
Query: 373 NVITWTSIITGFAMHGDAGTALRLFDQMNADGIEPNSVTFVSVLYACSHAGLVDKG--LH 200
+++ WT++I+ +A ALR+F++M GI+P+ VT +SV+ AC + G +DK +H
Sbjct: 311 DLVCWTTMISAYAESDHPQEALRVFEEMCCSGIKPDVVTMLSVISACVNLGTLDKAKWVH 370
Query: 199 MFALMTNKYNILPKQEHYGCMVDLLGRANFLRESLDLVKSMPFTPNVVVWGSLLSACRVH 20
+ + ++LP ++++ + L + D+ + MP T NVV W S+++A +H
Sbjct: 371 RYTHLNGLESVLPID---NALINMYAKCGGLDAARDVFEKMP-TRNVVSWSSMINAFAMH 426
Query: 19 GD 14
G+
Sbjct: 427 GE 428
>ref|XP_002315764.1| predicted protein [Populus trichocarpa] gi|222864804|gb|EEF01935.1|
predicted protein [Populus trichocarpa]
Length = 452
Score = 181 bits (459), Expect = 6e-44
Identities = 81/124 (65%), Positives = 102/124 (82%)
Frame = -3
Query: 373 NVITWTSIITGFAMHGDAGTALRLFDQMNADGIEPNSVTFVSVLYACSHAGLVDKGLHMF 194
NVI+WTS+I FA+HGDA AL+ F QM + I+PN VTFV VLYACSHAGLV++G F
Sbjct: 145 NVISWTSMINAFAIHGDASNALKFFYQMKDENIKPNGVTFVGVLYACSHAGLVEEGRRTF 204
Query: 193 ALMTNKYNILPKQEHYGCMVDLLGRANFLRESLDLVKSMPFTPNVVVWGSLLSACRVHGD 14
A MTN++NI PK EHYGCMVDL GRAN LR++L+LV++MP PNVV+WGSL++AC++HG+
Sbjct: 205 ASMTNEHNITPKHEHYGCMVDLFGRANLLRDALELVETMPLAPNVVIWGSLMAACQIHGE 264
Query: 13 VELG 2
ELG
Sbjct: 265 NELG 268
Score = 66.2 bits (160), Expect = 3e-09
Identities = 36/122 (29%), Positives = 67/122 (54%), Gaps = 2/122 (1%)
Frame = -3
Query: 373 NVITWTSIITGFAMHGDAGTALRLFDQMNADGIEPNSVTFVSVLYACSHAGLVD--KGLH 200
+++ W+++I+G+A AL LF +M GI+P+ VT +SV+ AC+ G++D K +H
Sbjct: 44 DLVCWSAMISGYAESDKPQEALNLFSEMQVFGIKPDQVTILSVISACARLGVLDRAKWIH 103
Query: 199 MFALMTNKYNILPKQEHYGCMVDLLGRANFLRESLDLVKSMPFTPNVVVWGSLLSACRVH 20
M+ LP ++D+ + L + + + M + NV+ W S+++A +H
Sbjct: 104 MYVDKNGLGGALPVN---NALIDMYAKCGNLGAARGVFEKMQ-SRNVISWTSMINAFAIH 159
Query: 19 GD 14
GD
Sbjct: 160 GD 161
>ref|NP_193218.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75274931|sp|O23337.1|PP311_ARATH RecName:
Full=Pentatricopeptide repeat-containing protein
At4g14820 gi|2244839|emb|CAB10261.1| hypothetical
protein [Arabidopsis thaliana]
gi|7268228|emb|CAB78524.1| hypothetical protein
[Arabidopsis thaliana] gi|332658106|gb|AEE83506.1|
pentatricopeptide repeat-containing protein [Arabidopsis
thaliana]
Length = 722
Score = 174 bits (442), Expect = 5e-42
Identities = 76/124 (61%), Positives = 101/124 (81%)
Frame = -3
Query: 373 NVITWTSIITGFAMHGDAGTALRLFDQMNADGIEPNSVTFVSVLYACSHAGLVDKGLHMF 194
NV++W+S+I +MHG+A AL LF +M + +EPN VTFV VLY CSH+GLV++G +F
Sbjct: 409 NVVSWSSMINALSMHGEASDALSLFARMKQENVEPNEVTFVGVLYGCSHSGLVEEGKKIF 468
Query: 193 ALMTNKYNILPKQEHYGCMVDLLGRANFLRESLDLVKSMPFTPNVVVWGSLLSACRVHGD 14
A MT++YNI PK EHYGCMVDL GRAN LRE+L++++SMP NVV+WGSL+SACR+HG+
Sbjct: 469 ASMTDEYNITPKLEHYGCMVDLFGRANLLREALEVIESMPVASNVVIWGSLMSACRIHGE 528
Query: 13 VELG 2
+ELG
Sbjct: 529 LELG 532
Score = 59.7 bits (143), Expect = 2e-07
Identities = 31/120 (25%), Positives = 68/120 (56%)
Frame = -3
Query: 373 NVITWTSIITGFAMHGDAGTALRLFDQMNADGIEPNSVTFVSVLYACSHAGLVDKGLHMF 194
+++ WT++I+ + ALR+F++M GI+P+ V+ SV+ AC++ G++DK +
Sbjct: 308 DLVCWTTMISAYVESDYPQEALRVFEEMCCSGIKPDVVSMFSVISACANLGILDKAKWVH 367
Query: 193 ALMTNKYNILPKQEHYGCMVDLLGRANFLRESLDLVKSMPFTPNVVVWGSLLSACRVHGD 14
+ + + + + ++++ + L + D+ + MP NVV W S+++A +HG+
Sbjct: 368 SCI-HVNGLESELSINNALINMYAKCGGLDATRDVFEKMP-RRNVVSWSSMINALSMHGE 425
>gb|EEE60540.1| hypothetical protein OsJ_13880 [Oryza sativa Japonica Group]
Length = 594
Score = 171 bits (434), Expect = 4e-41
Identities = 77/124 (62%), Positives = 98/124 (79%)
Frame = -3
Query: 373 NVITWTSIITGFAMHGDAGTALRLFDQMNADGIEPNSVTFVSVLYACSHAGLVDKGLHMF 194
NV+TWTSIIT AMHGD +AL LF+ M ++GI+PN VTF+ +LYAC HAGLV++G +F
Sbjct: 367 NVVTWTSIITASAMHGDGRSALTLFENMKSEGIQPNGVTFLGLLYACCHAGLVEEGRLLF 426
Query: 193 ALMTNKYNILPKQEHYGCMVDLLGRANFLRESLDLVKSMPFTPNVVVWGSLLSACRVHGD 14
+M +Y I P EHYGCMVDLLGRA L ++ DL++SM PNVV+WGSLL+ACR+HGD
Sbjct: 427 KIMVQQYRIEPMHEHYGCMVDLLGRAKLLGQAADLIQSMHLRPNVVIWGSLLAACRMHGD 486
Query: 13 VELG 2
+ELG
Sbjct: 487 LELG 490
Score = 74.7 bits (182), Expect = 7e-12
Identities = 39/122 (31%), Positives = 69/122 (56%), Gaps = 2/122 (1%)
Frame = -3
Query: 373 NVITWTSIITGFAMHGDAGTALRLFDQMNADGIEPNSVTFVSVLYACSHAGLVDKG--LH 200
+V++W+++I G+A AL LF M G++P+ +T +SV+ AC++ G ++K +H
Sbjct: 266 DVVSWSAMIAGYAESSKPMEALNLFHDMQRSGVKPDEITMLSVISACANVGALEKARCIH 325
Query: 199 MFALMTNKYNILPKQEHYGCMVDLLGRANFLRESLDLVKSMPFTPNVVVWGSLLSACRVH 20
F + ILP ++D+ + L +LD+ +MP NVV W S+++A +H
Sbjct: 326 SFVENHSMCKILPIG---NALIDMFSKCGSLTLALDVFNAMP-QKNVVTWTSIITASAMH 381
Query: 19 GD 14
GD
Sbjct: 382 GD 383