BLASTX nr result
ID: Coptis23_contig00036840
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis23_contig00036840
(573 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002872815.1| pentatricopeptide repeat-containing protein ... 194 7e-48
ref|XP_003538894.1| PREDICTED: pentatricopeptide repeat-containi... 194 9e-48
emb|CBI15551.3| unnamed protein product [Vitis vinifera] 194 9e-48
ref|XP_003634283.1| PREDICTED: pentatricopeptide repeat-containi... 194 9e-48
ref|XP_003524347.1| PREDICTED: pentatricopeptide repeat-containi... 193 2e-47
>ref|XP_002872815.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata] gi|297318652|gb|EFH49074.1|
pentatricopeptide repeat-containing protein [Arabidopsis
lyrata subsp. lyrata]
Length = 776
Score = 194 bits (494), Expect = 7e-48
Identities = 91/189 (48%), Positives = 131/189 (69%)
Frame = +3
Query: 6 IMEGGFKSDLRILNSAINMYVQCGSIGKAFEIFVKMPKKDVISYNSMITGYATHGDAKQA 185
+++GG+++ + N+ + MY +CGSI +A ++F +M KD++S+N+MI GY+ HG ++A
Sbjct: 430 LVKGGYETGCFVGNALLLMYCKCGSIEEANDLFKEMAGKDIVSWNTMIAGYSRHGFGEEA 489
Query: 186 FSMFSMMSQDSVVPNSVTFVGLLSACAHSGLEHMGGRYFRLMLDLGYLELKSEHYSCMVD 365
F M ++ + P+ T V +LSAC+H+GL G +YF M + S+HY+CMVD
Sbjct: 490 LRFFESMKREGLKPDDATMVAVLSACSHTGLVDKGRQYFHTMTQDYGVRPNSQHYACMVD 549
Query: 366 LLGRAGHLEEAHNLILGMPIKPVASTWGALLGACRIHGNIGLAEVVAQRLFEMEPENSGN 545
LLGRAG LEEAHNL+ MP +P A+ WG LLGA R+HGN LAE A ++F MEPENSG
Sbjct: 550 LLGRAGLLEEAHNLMKNMPFEPDAAIWGTLLGASRVHGNTELAETAADKIFAMEPENSGM 609
Query: 546 YAVLANLYA 572
Y +L+NLYA
Sbjct: 610 YVLLSNLYA 618
Score = 71.2 bits (173), Expect = 1e-10
Identities = 44/145 (30%), Positives = 74/145 (51%)
Frame = +3
Query: 45 NSAINMYVQCGSIGKAFEIFVKMPKKDVISYNSMITGYATHGDAKQAFSMFSMMSQDSVV 224
N+ I Y QCG I +A +F KMPK+D +S+ +MI GY+ G + +A +F +M ++
Sbjct: 342 NTMITGYAQCGKISEAKNLFDKMPKRDPVSWAAMIAGYSQSGHSYEALRLFVLMEREGGR 401
Query: 225 PNSVTFVGLLSACAHSGLEHMGGRYFRLMLDLGYLELKSEHYSCMVDLLGRAGHLEEAHN 404
N +F LS CA +G + ++ GY E + ++ + + G +EEA++
Sbjct: 402 LNRSSFSSALSTCADVVALELGKQLHGRLVKGGY-ETGCFVGNALLLMYCKCGSIEEAND 460
Query: 405 LILGMPIKPVASTWGALLGACRIHG 479
L M K + S W ++ HG
Sbjct: 461 LFKEMAGKDIVS-WNTMIAGYSRHG 484
>ref|XP_003538894.1| PREDICTED: pentatricopeptide repeat-containing protein At4g02750-like
[Glycine max]
Length = 748
Score = 194 bits (493), Expect = 9e-48
Identities = 91/189 (48%), Positives = 132/189 (69%)
Frame = +3
Query: 6 IMEGGFKSDLRILNSAINMYVQCGSIGKAFEIFVKMPKKDVISYNSMITGYATHGDAKQA 185
I++ G+ +DL + N+ I MY +CG + A ++F + D+IS+NS+I+GYA +G A +A
Sbjct: 482 ILKSGYMNDLFVGNALIAMYAKCGRVQSAEQVFRDIECVDLISWNSLISGYALNGYANKA 541
Query: 186 FSMFSMMSQDSVVPNSVTFVGLLSACAHSGLEHMGGRYFRLMLDLGYLELKSEHYSCMVD 365
F F MS + VVP+ VTF+G+LSAC+H+GL + G F+ M++ +E +EHYSC+VD
Sbjct: 542 FKAFEQMSSERVVPDEVTFIGMLSACSHAGLANQGLDIFKCMIEDFAIEPLAEHYSCLVD 601
Query: 366 LLGRAGHLEEAHNLILGMPIKPVASTWGALLGACRIHGNIGLAEVVAQRLFEMEPENSGN 545
LLGR G LEEA N + GM +K A WG+LLGACR+H N+ L A+RLFE+EP N+ N
Sbjct: 602 LLGRVGRLEEAFNTVRGMKVKANAGLWGSLLGACRVHKNLELGRFAAERLFELEPHNASN 661
Query: 546 YAVLANLYA 572
Y L+N++A
Sbjct: 662 YITLSNMHA 670
Score = 62.8 bits (151), Expect = 4e-08
Identities = 37/145 (25%), Positives = 71/145 (48%)
Frame = +3
Query: 45 NSAINMYVQCGSIGKAFEIFVKMPKKDVISYNSMITGYATHGDAKQAFSMFSMMSQDSVV 224
N+ I+ Y Q G + +A EIF M +K+++S+NS+I G+ + A MM ++
Sbjct: 394 NTMISGYAQAGQMDRATEIFQAMREKNIVSWNSLIAGFLQNNLYLDALKSLVMMGKEGKK 453
Query: 225 PNSVTFVGLLSACAHSGLEHMGGRYFRLMLDLGYLELKSEHYSCMVDLLGRAGHLEEAHN 404
P+ TF LSACA+ +G + +L GY+ + ++ + + G ++ A
Sbjct: 454 PDQSTFACTLSACANLAALQVGNQLHEYILKSGYMN-DLFVGNALIAMYAKCGRVQSAEQ 512
Query: 405 LILGMPIKPVASTWGALLGACRIHG 479
+ + + S W +L+ ++G
Sbjct: 513 VFRDIECVDLIS-WNSLISGYALNG 536
Score = 55.5 bits (132), Expect = 6e-06
Identities = 42/145 (28%), Positives = 67/145 (46%)
Frame = +3
Query: 24 KSDLRILNSAINMYVQCGSIGKAFEIFVKMPKKDVISYNSMITGYATHGDAKQAFSMFSM 203
K D N+ I Y + G A ++F +MP KD++SYNSM+ GY +G A F
Sbjct: 139 KLDTACWNAMIAGYAKKGQFNDAKKVFEQMPAKDLVSYNSMLAGYTQNGKMHLALQFFES 198
Query: 204 MSQDSVVPNSVTFVGLLSACAHSGLEHMGGRYFRLMLDLGYLELKSEHYSCMVDLLGRAG 383
M++ +VV ++ G + SG + F + + + + M+ L + G
Sbjct: 199 MTERNVVSWNLMVAGYVK----SGDLSSAWQLFEKIPNPNAVS-----WVTMLCGLAKYG 249
Query: 384 HLEEAHNLILGMPIKPVASTWGALL 458
+ EA L MP K V S W A++
Sbjct: 250 KMAEARELFDRMPSKNVVS-WNAMI 273
>emb|CBI15551.3| unnamed protein product [Vitis vinifera]
Length = 685
Score = 194 bits (493), Expect = 9e-48
Identities = 91/189 (48%), Positives = 131/189 (69%)
Frame = +3
Query: 6 IMEGGFKSDLRILNSAINMYVQCGSIGKAFEIFVKMPKKDVISYNSMITGYATHGDAKQA 185
+++ G +S + N+ + MY +CG+I A+ +F + +K+V+S+N+MI GYA HG K+A
Sbjct: 339 VVKAGLESGCYVGNALLVMYCKCGNIDDAYIVFEGIEEKEVVSWNTMIAGYARHGFGKEA 398
Query: 186 FSMFSMMSQDSVVPNSVTFVGLLSACAHSGLEHMGGRYFRLMLDLGYLELKSEHYSCMVD 365
+F M + ++P+ VT VG+LSAC+H+GL G YF M + S+HY+CM+D
Sbjct: 399 LMLFESMKKTGILPDDVTMVGVLSACSHTGLVDKGTEYFYSMTQDYGITANSKHYTCMID 458
Query: 366 LLGRAGHLEEAHNLILGMPIKPVASTWGALLGACRIHGNIGLAEVVAQRLFEMEPENSGN 545
LLGRAG L++A NL+ MP +P A+TWGALLGA RIHGN L E A+ +FEMEP+NSG
Sbjct: 459 LLGRAGRLDDAQNLMKNMPFEPDAATWGALLGASRIHGNTELGEKAAKMIFEMEPDNSGM 518
Query: 546 YAVLANLYA 572
Y +L+NLYA
Sbjct: 519 YVLLSNLYA 527
Score = 65.5 bits (158), Expect = 6e-09
Identities = 42/145 (28%), Positives = 72/145 (49%)
Frame = +3
Query: 45 NSAINMYVQCGSIGKAFEIFVKMPKKDVISYNSMITGYATHGDAKQAFSMFSMMSQDSVV 224
N+ I Y Q G I +A F +MP++D IS+ ++I GYA G ++A +F M +D
Sbjct: 251 NTMITGYAQNGDIAQARNFFDRMPQRDSISWAAIIAGYAQSGYGEEALHLFVEMKRDGER 310
Query: 225 PNSVTFVGLLSACAHSGLEHMGGRYFRLMLDLGYLELKSEHYSCMVDLLGRAGHLEEAHN 404
N TF LS CA +G + ++ G LE + ++ + + G++++A+
Sbjct: 311 LNRSTFTSTLSTCAEIAALELGKQVHGRVVKAG-LESGCYVGNALLVMYCKCGNIDDAYI 369
Query: 405 LILGMPIKPVASTWGALLGACRIHG 479
+ G+ K V S W ++ HG
Sbjct: 370 VFEGIEEKEVVS-WNTMIAGYARHG 393
Score = 59.3 bits (142), Expect = 4e-07
Identities = 41/144 (28%), Positives = 72/144 (50%)
Frame = +3
Query: 99 IFVKMPKKDVISYNSMITGYATHGDAKQAFSMFSMMSQDSVVPNSVTFVGLLSACAHSGL 278
+F +MP++DV+S+N+M++GYA +G K+A +F M NS+++ G+L+A +G
Sbjct: 52 LFDQMPERDVVSWNAMLSGYAQNGYVKEAKEIFDEMP----CKNSISWNGMLAAYVQNGR 107
Query: 279 EHMGGRYFRLMLDLGYLELKSEHYSCMVDLLGRAGHLEEAHNLILGMPIKPVASTWGALL 458
R F D + ++CM+ + L +A + MP + S W ++
Sbjct: 108 IEDARRLFESKADWELIS-----WNCMMGGYVKRNRLVDARGIFDRMPERDEVS-WNTMI 161
Query: 459 GACRIHGNIGLAEVVAQRLFEMEP 530
+G + + AQRLFE P
Sbjct: 162 SGYAQNGEL----LEAQRLFEESP 181
Score = 55.5 bits (132), Expect = 6e-06
Identities = 47/185 (25%), Positives = 90/185 (48%), Gaps = 2/185 (1%)
Frame = +3
Query: 24 KSDLRIL--NSAINMYVQCGSIGKAFEIFVKMPKKDVISYNSMITGYATHGDAKQAFSMF 197
K+D ++ N + YV+ + A IF +MP++D +S+N+MI+GYA +G+ +A +F
Sbjct: 118 KADWELISWNCMMGGYVKRNRLVDARGIFDRMPERDEVSWNTMISGYAQNGELLEAQRLF 177
Query: 198 SMMSQDSVVPNSVTFVGLLSACAHSGLEHMGGRYFRLMLDLGYLELKSEHYSCMVDLLGR 377
++S V + T+ ++S +G+ R F G E S ++ ++ +
Sbjct: 178 ----EESPVRDVFTWTAMVSGYVQNGMLDEARRVFD-----GMPEKNSVSWNAIIAGYVQ 228
Query: 378 AGHLEEAHNLILGMPIKPVASTWGALLGACRIHGNIGLAEVVAQRLFEMEPENSGNYAVL 557
+++A L MP + V S+W ++ +G+I A R M +S ++A +
Sbjct: 229 CKRMDQARELFEAMPCQNV-SSWNTMITGYAQNGDIAQARNFFDR---MPQRDSISWAAI 284
Query: 558 ANLYA 572
YA
Sbjct: 285 IAGYA 289
>ref|XP_003634283.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Vitis vinifera]
Length = 766
Score = 194 bits (493), Expect = 9e-48
Identities = 91/189 (48%), Positives = 131/189 (69%)
Frame = +3
Query: 6 IMEGGFKSDLRILNSAINMYVQCGSIGKAFEIFVKMPKKDVISYNSMITGYATHGDAKQA 185
+++ G +S + N+ + MY +CG+I A+ +F + +K+V+S+N+MI GYA HG K+A
Sbjct: 420 VVKAGLESGCYVGNALLVMYCKCGNIDDAYIVFEGIEEKEVVSWNTMIAGYARHGFGKEA 479
Query: 186 FSMFSMMSQDSVVPNSVTFVGLLSACAHSGLEHMGGRYFRLMLDLGYLELKSEHYSCMVD 365
+F M + ++P+ VT VG+LSAC+H+GL G YF M + S+HY+CM+D
Sbjct: 480 LMLFESMKKTGILPDDVTMVGVLSACSHTGLVDKGTEYFYSMTQDYGITANSKHYTCMID 539
Query: 366 LLGRAGHLEEAHNLILGMPIKPVASTWGALLGACRIHGNIGLAEVVAQRLFEMEPENSGN 545
LLGRAG L++A NL+ MP +P A+TWGALLGA RIHGN L E A+ +FEMEP+NSG
Sbjct: 540 LLGRAGRLDDAQNLMKNMPFEPDAATWGALLGASRIHGNTELGEKAAKMIFEMEPDNSGM 599
Query: 546 YAVLANLYA 572
Y +L+NLYA
Sbjct: 600 YVLLSNLYA 608
Score = 65.5 bits (158), Expect = 6e-09
Identities = 42/145 (28%), Positives = 72/145 (49%)
Frame = +3
Query: 45 NSAINMYVQCGSIGKAFEIFVKMPKKDVISYNSMITGYATHGDAKQAFSMFSMMSQDSVV 224
N+ I Y Q G I +A F +MP++D IS+ ++I GYA G ++A +F M +D
Sbjct: 332 NTMITGYAQNGDIAQARNFFDRMPQRDSISWAAIIAGYAQSGYGEEALHLFVEMKRDGER 391
Query: 225 PNSVTFVGLLSACAHSGLEHMGGRYFRLMLDLGYLELKSEHYSCMVDLLGRAGHLEEAHN 404
N TF LS CA +G + ++ G LE + ++ + + G++++A+
Sbjct: 392 LNRSTFTSTLSTCAEIAALELGKQVHGRVVKAG-LESGCYVGNALLVMYCKCGNIDDAYI 450
Query: 405 LILGMPIKPVASTWGALLGACRIHG 479
+ G+ K V S W ++ HG
Sbjct: 451 VFEGIEEKEVVS-WNTMIAGYARHG 474
Score = 61.2 bits (147), Expect = 1e-07
Identities = 47/167 (28%), Positives = 82/167 (49%)
Frame = +3
Query: 30 DLRILNSAINMYVQCGSIGKAFEIFVKMPKKDVISYNSMITGYATHGDAKQAFSMFSMMS 209
DL N I+ V+ ++ A +F +MP++DV+S+N+M++GYA +G K+A +F M
Sbjct: 110 DLVSWNVMISGCVRYRNLRAARLLFDQMPERDVVSWNAMLSGYAQNGYVKEAKEIFDEMP 169
Query: 210 QDSVVPNSVTFVGLLSACAHSGLEHMGGRYFRLMLDLGYLELKSEHYSCMVDLLGRAGHL 389
NS+++ G+L+A +G R F D + ++CM+ + L
Sbjct: 170 ----CKNSISWNGMLAAYVQNGRIEDARRLFESKADWELIS-----WNCMMGGYVKRNRL 220
Query: 390 EEAHNLILGMPIKPVASTWGALLGACRIHGNIGLAEVVAQRLFEMEP 530
+A + MP + S W ++ +G + + AQRLFE P
Sbjct: 221 VDARGIFDRMPERDEVS-WNTMISGYAQNGEL----LEAQRLFEESP 262
>ref|XP_003524347.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Glycine max]
Length = 750
Score = 193 bits (490), Expect = 2e-47
Identities = 91/189 (48%), Positives = 129/189 (68%)
Frame = +3
Query: 6 IMEGGFKSDLRILNSAINMYVQCGSIGKAFEIFVKMPKKDVISYNSMITGYATHGDAKQA 185
++ G++ + N+ + MY +CG I +A+++F + KD++S+N+M+ GYA HG +QA
Sbjct: 404 VVRTGYEKGCLVGNALVGMYCKCGCIDEAYDVFQGVQHKDIVSWNTMLAGYARHGFGRQA 463
Query: 186 FSMFSMMSQDSVVPNSVTFVGLLSACAHSGLEHMGGRYFRLMLDLGYLELKSEHYSCMVD 365
++F M V P+ +T VG+LSAC+H+GL G YF M + S+HY+CM+D
Sbjct: 464 LTVFESMITAGVKPDEITMVGVLSACSHTGLTDRGTEYFHSMNKDYGITPNSKHYACMID 523
Query: 366 LLGRAGHLEEAHNLILGMPIKPVASTWGALLGACRIHGNIGLAEVVAQRLFEMEPENSGN 545
LLGRAG LEEA NLI MP +P A+TWGALLGA RIHGN+ L E A+ +F+MEP NSG
Sbjct: 524 LLGRAGCLEEAQNLIRNMPFEPDAATWGALLGASRIHGNMELGEQAAEMVFKMEPHNSGM 583
Query: 546 YAVLANLYA 572
Y +L+NLYA
Sbjct: 584 YVLLSNLYA 592
Score = 66.2 bits (160), Expect = 4e-09
Identities = 43/145 (29%), Positives = 74/145 (51%)
Frame = +3
Query: 45 NSAINMYVQCGSIGKAFEIFVKMPKKDVISYNSMITGYATHGDAKQAFSMFSMMSQDSVV 224
N I+ Y Q G + +A +F MP++D +S+ ++I GYA +G ++A +M M +D
Sbjct: 316 NIMISGYCQNGDLAQARNLFDMMPQRDSVSWAAIIAGYAQNGLYEEAMNMLVEMKRDGES 375
Query: 225 PNSVTFVGLLSACAHSGLEHMGGRYFRLMLDLGYLELKSEHYSCMVDLLGRAGHLEEAHN 404
N TF LSACA +G + ++ GY E + +V + + G ++EA++
Sbjct: 376 LNRSTFCCALSACADIAALELGKQVHGQVVRTGY-EKGCLVGNALVGMYCKCGCIDEAYD 434
Query: 405 LILGMPIKPVASTWGALLGACRIHG 479
+ G+ K + S W +L HG
Sbjct: 435 VFQGVQHKDIVS-WNTMLAGYARHG 458
Score = 59.7 bits (143), Expect = 3e-07
Identities = 53/187 (28%), Positives = 94/187 (50%), Gaps = 4/187 (2%)
Frame = +3
Query: 24 KSDLRIL--NSAINMYVQCGSIGKAFEIFVKMPKKDVISYNSMITGYATHGDAKQAFSMF 197
KSD ++ N + YV+ +G A ++F ++P +D+IS+N+MI+GYA GD QA +F
Sbjct: 183 KSDWELISCNCLMGGYVKRNMLGDARQLFDQIPVRDLISWNTMISGYAQDGDLSQARRLF 242
Query: 198 SMMSQDSVVPNSVTFVGLLSACAHSGLEHMGGRYFRLMLDLGYLELKSEHYSCMVDLLGR 377
++S V + T+ ++ A G+ R F M + + Y+ M+ +
Sbjct: 243 ----EESPVRDVFTWTAMVYAYVQDGMLDEARRVFDEM-----PQKREMSYNVMIAGYAQ 293
Query: 378 AGHLEEAHNLILGMPIKPVASTWGALL-GACRIHGNIGLAEVVAQRLFEMEPE-NSGNYA 551
++ L MP P +W ++ G C+ N LA+ A+ LF+M P+ +S ++A
Sbjct: 294 YKRMDMGRELFEEMPF-PNIGSWNIMISGYCQ---NGDLAQ--ARNLFDMMPQRDSVSWA 347
Query: 552 VLANLYA 572
+ YA
Sbjct: 348 AIIAGYA 354
Score = 57.8 bits (138), Expect = 1e-06
Identities = 45/167 (26%), Positives = 76/167 (45%)
Frame = +3
Query: 30 DLRILNSAINMYVQCGSIGKAFEIFVKMPKKDVISYNSMITGYATHGDAKQAFSMFSMMS 209
DL N + Y + + A +F MP+KDV+S+N+M++GY G +A +F M
Sbjct: 94 DLFSWNLMLTGYARNRRLRDARMLFDSMPEKDVVSWNAMLSGYVRSGHVDEARDVFDRMP 153
Query: 210 QDSVVPNSVTFVGLLSACAHSGLEHMGGRYFRLMLDLGYLELKSEHYSCMVDLLGRAGHL 389
NS+++ GLL+A SG R F D + +C++ + L
Sbjct: 154 H----KNSISWNGLLAAYVRSGRLEEARRLFESKSDWELISC-----NCLMGGYVKRNML 204
Query: 390 EEAHNLILGMPIKPVASTWGALLGACRIHGNIGLAEVVAQRLFEMEP 530
+A L +P++ + S W ++ G++ A+RLFE P
Sbjct: 205 GDARQLFDQIPVRDLIS-WNTMISGYAQDGDLS----QARRLFEESP 246