BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00036768
         (404 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABD28670.2| RNA-directed DNA polymerase (Reverse transcriptas...   107   5e-23
gb|ABD32264.2| RNA-directed DNA polymerase , putative [Medicago ...   103   1e-20
gb|ABN09154.1| RNA-directed DNA polymerase (Reverse transcriptas...   100   2e-19
ref|XP_002331075.1| predicted protein [Populus trichocarpa] gi|2...    90   2e-16
emb|CAE04647.2| OSJNBa0061G20.3 [Oryza sativa Japonica Group]          89   4e-16

>gb|ABD28670.2| RNA-directed DNA polymerase (Reverse transcriptase) [Medicago
           truncatula]
          Length = 642

 Score =  107 bits (267), Expect(2) = 5e-23
 Identities = 45/101 (44%), Positives = 69/101 (68%)
 Frame = -2

Query: 304 VKEVLGIQVGMLPDKYLGVPLIQGRVKRMHLSSIIDKVRNRVASWKGKLLSFQGRVVLIK 125
           +  +LG  VG LP  YLG P+ +G+ K +H   I DKV+ ++A WK  LLS  GR+ L+K
Sbjct: 481 IVNILGFNVGSLPFTYLGAPIFKGKPKGIHFQPIADKVKAKLAKWKASLLSIAGRIQLVK 540

Query: 124 SVLSSIPIYNMSVFNWPISIIKDCEAMFRNFLWSGDPMERR 2
           SV+ S+ ++ MS+++WPI I+K+ E   +NF+WSGD  +R+
Sbjct: 541 SVVQSMLVHTMSIYSWPIKILKEMEKWIKNFIWSGDVTKRK 581



 Score = 25.0 bits (53), Expect(2) = 5e-23
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = -3

Query: 399 LLELYQESSGQSMNKNKSRMFTRPIDATRLQGL 301
           L   Y + SGQ MN  KS +F   I  TR+  +
Sbjct: 449 LFTRYADCSGQIMNIRKSFIFAGGITDTRMNNI 481


>gb|ABD32264.2| RNA-directed DNA polymerase , putative [Medicago truncatula]
          Length = 161

 Score =  103 bits (258), Expect = 1e-20
 Identities = 43/98 (43%), Positives = 70/98 (71%)
 Frame = -2

Query: 295 VLGIQVGMLPDKYLGVPLIQGRVKRMHLSSIIDKVRNRVASWKGKLLSFQGRVVLIKSVL 116
           ++G   G LP  YLGVP+ +G+ K +HL  I+DK+  ++++WK  LLS  GRV ++KSV+
Sbjct: 25  IIGFNHGTLPFTYLGVPIFKGKPKVIHLQPIVDKIIAKLSTWKASLLSIAGRVQMVKSVI 84

Query: 115 SSIPIYNMSVFNWPISIIKDCEAMFRNFLWSGDPMERR 2
            S+  ++++V+NWP S++KD E   +NF+WSGD  +R+
Sbjct: 85  QSMLTHSITVYNWPTSLLKDLEKSIKNFIWSGDTSKRK 122


>gb|ABN09154.1| RNA-directed DNA polymerase (Reverse transcriptase) [Medicago
           truncatula]
          Length = 528

 Score =  100 bits (248), Expect = 2e-19
 Identities = 42/98 (42%), Positives = 67/98 (68%)
 Frame = -2

Query: 295 VLGIQVGMLPDKYLGVPLIQGRVKRMHLSSIIDKVRNRVASWKGKLLSFQGRVVLIKSVL 116
           V+G   G  P  YLGVP+ +G+ K   L  I+DK++ ++++WK  +LS  GRV LIKSV 
Sbjct: 390 VIGFNKGSFPFNYLGVPIFKGKPKARFLQPIVDKIKTKLSNWKASILSIAGRVQLIKSVA 449

Query: 115 SSIPIYNMSVFNWPISIIKDCEAMFRNFLWSGDPMERR 2
            S+ I+ +++++WP  ++K+ E  FRNF+WSGD  +R+
Sbjct: 450 QSMLIHTITIYDWPSFLLKELETCFRNFIWSGDITKRK 487


>ref|XP_002331075.1| predicted protein [Populus trichocarpa] gi|222873039|gb|EEF10170.1|
           predicted protein [Populus trichocarpa]
          Length = 517

 Score = 89.7 bits (221), Expect = 2e-16
 Identities = 42/99 (42%), Positives = 65/99 (65%)
 Frame = -2

Query: 307 RVKEVLGIQVGMLPDKYLGVPLIQGRVKRMHLSSIIDKVRNRVASWKGKLLSFQGRVVLI 128
           ++  +LG + G LP KYLGVPL+  R+K ++   ++D++ ++V  W  + LS+ GRV LI
Sbjct: 42  QIIHILGFREGELPMKYLGVPLLSSRLKAIYCKGLVDRITSKVRHWTCRTLSYAGRVQLI 101

Query: 127 KSVLSSIPIYNMSVFNWPISIIKDCEAMFRNFLWSGDPM 11
            SVL SI +Y  S+F  P  +IK+ E + ++FLWSG  M
Sbjct: 102 NSVLFSIQVYWASLFLLPGQVIKNVEQIMKSFLWSGSDM 140


>emb|CAE04647.2| OSJNBa0061G20.3 [Oryza sativa Japonica Group]
          Length = 1463

 Score = 89.0 bits (219), Expect = 4e-16
 Identities = 41/98 (41%), Positives = 61/98 (62%)
 Frame = -2

Query: 310  TRVKEVLGIQVGMLPDKYLGVPLIQGRVKRMHLSSIIDKVRNRVASWKGKLLSFQGRVVL 131
            + V E    Q G  P  YLG+PL  GR+KR+HL  ++DK+++R+A WKGKL+   GR  L
Sbjct: 1091 SEVLENFNGQRGNFPITYLGLPLTPGRIKRIHLQPVMDKLQSRLAGWKGKLIQQSGRKTL 1150

Query: 130  IKSVLSSIPIYNMSVFNWPISIIKDCEAMFRNFLWSGD 17
            + S+ SSIP Y ++    P   + D + + + FLW+GD
Sbjct: 1151 VTSIFSSIPTYFLTTLKPPKQFLTDMDKIRKKFLWAGD 1188