BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00036728
         (276 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002278166.1| PREDICTED: pentatricopeptide repeat-containi...   135   3e-30
ref|XP_002303738.1| predicted protein [Populus trichocarpa] gi|2...   127   9e-28
ref|XP_002512699.1| pentatricopeptide repeat-containing protein,...   122   4e-26
emb|CAN82226.1| hypothetical protein VITISV_011875 [Vitis vinifera]   120   1e-25
ref|XP_004160350.1| PREDICTED: pentatricopeptide repeat-containi...   117   7e-25

>ref|XP_002278166.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Vitis vinifera]
          Length = 662

 Score =  135 bits (341), Expect = 3e-30
 Identities = 66/90 (73%), Positives = 75/90 (83%)
 Frame = +2

Query: 5   DVLVANSLLKMYIDCGSIKDARLVFNKMSSKDVISWTAIFHWYVKNGEFNEALKLFRLMN 184
           DVLV+NSLLKMYIDCGSIKDAR VF++M SKDVISWT IF  YVKNG FNE LKLFR M+
Sbjct: 228 DVLVSNSLLKMYIDCGSIKDARAVFDRMPSKDVISWTEIFRGYVKNGGFNEGLKLFRQMS 287

Query: 185 SQGTKPDSVSVSGVLPACARIAAGKNGKEI 274
            +G KPDS+++S +LPAC R AA K GKEI
Sbjct: 288 MEGVKPDSLAISSILPACGRGAAHKQGKEI 317


>ref|XP_002303738.1| predicted protein [Populus trichocarpa] gi|222841170|gb|EEE78717.1|
           predicted protein [Populus trichocarpa]
          Length = 663

 Score =  127 bits (319), Expect = 9e-28
 Identities = 64/90 (71%), Positives = 72/90 (80%)
 Frame = +2

Query: 5   DVLVANSLLKMYIDCGSIKDARLVFNKMSSKDVISWTAIFHWYVKNGEFNEALKLFRLMN 184
           D+LV+NSLLKM IDC  ++DAR  FN+M++KDVISWT I   YVK GEFNEALKLFR MN
Sbjct: 229 DILVSNSLLKMQIDCQRMEDARGFFNQMTTKDVISWTEIICGYVKKGEFNEALKLFRKMN 288

Query: 185 SQGTKPDSVSVSGVLPACARIAAGKNGKEI 274
             G KPDS+SVS VLPACAR  A KNGKEI
Sbjct: 289 MDGIKPDSLSVSSVLPACARTVAHKNGKEI 318


>ref|XP_002512699.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223548660|gb|EEF50151.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 686

 Score =  122 bits (305), Expect = 4e-26
 Identities = 59/90 (65%), Positives = 73/90 (81%)
 Frame = +2

Query: 5   DVLVANSLLKMYIDCGSIKDARLVFNKMSSKDVISWTAIFHWYVKNGEFNEALKLFRLMN 184
           D+LV+NSLLKMY+DC  I+DAR  F++M +KD+ISWT I + YVK GEFNEALKLFR MN
Sbjct: 232 DILVSNSLLKMYVDCHCIEDARATFHQMPTKDIISWTEIINGYVKIGEFNEALKLFRQMN 291

Query: 185 SQGTKPDSVSVSGVLPACARIAAGKNGKEI 274
             G +PDS+S+S +LPACAR AA K G+EI
Sbjct: 292 IAGIRPDSLSLSTILPACARPAAHKLGREI 321


>emb|CAN82226.1| hypothetical protein VITISV_011875 [Vitis vinifera]
          Length = 734

 Score =  120 bits (300), Expect = 1e-25
 Identities = 57/81 (70%), Positives = 66/81 (81%)
 Frame = +2

Query: 32  KMYIDCGSIKDARLVFNKMSSKDVISWTAIFHWYVKNGEFNEALKLFRLMNSQGTKPDSV 211
           +MYIDCGSIKDAR VF++M SKDVISWT IF  YVKNG FNE LKLFR M+ +G KPDS+
Sbjct: 309 EMYIDCGSIKDARAVFDRMPSKDVISWTEIFRGYVKNGGFNEGLKLFRQMSMEGVKPDSL 368

Query: 212 SVSGVLPACARIAAGKNGKEI 274
           ++S +LPAC R AA K GKEI
Sbjct: 369 AISSILPACGRGAAHKQGKEI 389


>ref|XP_004160350.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Cucumis sativus]
          Length = 429

 Score =  117 bits (294), Expect = 7e-25
 Identities = 58/91 (63%), Positives = 70/91 (76%), Gaps = 1/91 (1%)
 Frame = +2

Query: 5   DVLVANSLLKMYIDCGSIKDARLVFNKMSSKDVISWTAIFHWYVKNGEFNEALKLFRLMN 184
           ++LV+NSLLKMYIDC SIKDAR  F++M SKD+ISWT + H YVK G  NEA KLFR MN
Sbjct: 194 NILVSNSLLKMYIDCDSIKDARGFFDQMPSKDIISWTELIHMYVKKGGINEAFKLFRQMN 253

Query: 185 SQG-TKPDSVSVSGVLPACARIAAGKNGKEI 274
             G  KPD  ++S +LPAC R+AA K+GKEI
Sbjct: 254 MDGELKPDPRTISSILPACGRMAAHKHGKEI 284