BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00036497
         (368 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002267199.1| PREDICTED: 116 kDa U5 small nuclear ribonucl...    51   3e-11
emb|CBI25589.3| unnamed protein product [Vitis vinifera]               51   3e-11
ref|XP_003549705.1| PREDICTED: 116 kDa U5 small nuclear ribonucl...    52   5e-11
ref|XP_003542669.1| PREDICTED: 116 kDa U5 small nuclear ribonucl...    52   6e-11
ref|XP_004139267.1| PREDICTED: 116 kDa U5 small nuclear ribonucl...    51   8e-11

>ref|XP_002267199.1| PREDICTED: 116 kDa U5 small nuclear ribonucleoprotein component
           [Vitis vinifera] gi|147858113|emb|CAN81413.1|
           hypothetical protein VITISV_031170 [Vitis vinifera]
          Length = 988

 Score = 51.2 bits (121), Expect(2) = 3e-11
 Identities = 26/32 (81%), Positives = 26/32 (81%)
 Frame = -3

Query: 354 QRFQCGAREGPLFDEPIRNVKFKTVDA*IAQE 259
           Q FQ GAREGPL DEPIRNVKFK VDA IA E
Sbjct: 783 QGFQWGAREGPLCDEPIRNVKFKIVDARIAPE 814



 Score = 41.6 bits (96), Expect(2) = 3e-11
 Identities = 27/51 (52%), Positives = 32/51 (62%), Gaps = 7/51 (13%)
 Frame = -1

Query: 251 GTGQITLTARRVA-------TPRLMEPVYYSDCEDTPSDWLCIYNLQGVIS 120
           GTGQI  TARRVA       TPRLMEPVYY + + TP D  C+  +  V+S
Sbjct: 819 GTGQIIPTARRVAYSAFLMATPRLMEPVYYVEIQ-TPID--CVSAIYTVLS 866


>emb|CBI25589.3| unnamed protein product [Vitis vinifera]
          Length = 931

 Score = 51.2 bits (121), Expect(2) = 3e-11
 Identities = 26/32 (81%), Positives = 26/32 (81%)
 Frame = -3

Query: 354 QRFQCGAREGPLFDEPIRNVKFKTVDA*IAQE 259
           Q FQ GAREGPL DEPIRNVKFK VDA IA E
Sbjct: 726 QGFQWGAREGPLCDEPIRNVKFKIVDARIAPE 757



 Score = 41.6 bits (96), Expect(2) = 3e-11
 Identities = 27/51 (52%), Positives = 32/51 (62%), Gaps = 7/51 (13%)
 Frame = -1

Query: 251 GTGQITLTARRVA-------TPRLMEPVYYSDCEDTPSDWLCIYNLQGVIS 120
           GTGQI  TARRVA       TPRLMEPVYY + + TP D  C+  +  V+S
Sbjct: 762 GTGQIIPTARRVAYSAFLMATPRLMEPVYYVEIQ-TPID--CVSAIYTVLS 809


>ref|XP_003549705.1| PREDICTED: 116 kDa U5 small nuclear ribonucleoprotein
           component-like [Glycine max]
          Length = 988

 Score = 52.0 bits (123), Expect(2) = 5e-11
 Identities = 26/33 (78%), Positives = 27/33 (81%)
 Frame = -3

Query: 354 QRFQCGAREGPLFDEPIRNVKFKTVDA*IAQET 256
           Q FQ GAREGPL DEPIRNVKFK VDA IA E+
Sbjct: 783 QGFQWGAREGPLCDEPIRNVKFKIVDAKIANES 815



 Score = 40.0 bits (92), Expect(2) = 5e-11
 Identities = 26/51 (50%), Positives = 32/51 (62%), Gaps = 7/51 (13%)
 Frame = -1

Query: 251 GTGQITLTARRVA-------TPRLMEPVYYSDCEDTPSDWLCIYNLQGVIS 120
           G+GQI  TARRVA       TPRLMEPVYY + + TP D  C+  +  V+S
Sbjct: 819 GSGQIIPTARRVAYSAFLMATPRLMEPVYYVEIQ-TPID--CVSAIYTVLS 866


>ref|XP_003542669.1| PREDICTED: 116 kDa U5 small nuclear ribonucleoprotein
           component-like [Glycine max]
          Length = 986

 Score = 51.6 bits (122), Expect(2) = 6e-11
 Identities = 26/33 (78%), Positives = 27/33 (81%)
 Frame = -3

Query: 354 QRFQCGAREGPLFDEPIRNVKFKTVDA*IAQET 256
           Q FQ GAREGPL DEPIRNVKFK VDA IA E+
Sbjct: 781 QGFQWGAREGPLCDEPIRNVKFKIVDAKIATES 813



 Score = 40.0 bits (92), Expect(2) = 6e-11
 Identities = 26/51 (50%), Positives = 32/51 (62%), Gaps = 7/51 (13%)
 Frame = -1

Query: 251 GTGQITLTARRVA-------TPRLMEPVYYSDCEDTPSDWLCIYNLQGVIS 120
           G+GQI  TARRVA       TPRLMEPVYY + + TP D  C+  +  V+S
Sbjct: 817 GSGQIIPTARRVAYSAFLMATPRLMEPVYYVEIQ-TPID--CVSAIYTVLS 864


>ref|XP_004139267.1| PREDICTED: 116 kDa U5 small nuclear ribonucleoprotein
           component-like [Cucumis sativus]
           gi|449493675|ref|XP_004159406.1| PREDICTED: 116 kDa U5
           small nuclear ribonucleoprotein component-like [Cucumis
           sativus]
          Length = 988

 Score = 51.2 bits (121), Expect(2) = 8e-11
 Identities = 26/32 (81%), Positives = 26/32 (81%)
 Frame = -3

Query: 354 QRFQCGAREGPLFDEPIRNVKFKTVDA*IAQE 259
           Q FQ GAREGPL DEPIRNVKFK VDA IA E
Sbjct: 783 QGFQWGAREGPLCDEPIRNVKFKIVDARIAPE 814



 Score = 40.0 bits (92), Expect(2) = 8e-11
 Identities = 26/51 (50%), Positives = 32/51 (62%), Gaps = 7/51 (13%)
 Frame = -1

Query: 251 GTGQITLTARRVA-------TPRLMEPVYYSDCEDTPSDWLCIYNLQGVIS 120
           G+GQI  TARRVA       TPRLMEPVYY + + TP D  C+  +  V+S
Sbjct: 819 GSGQIIPTARRVAYSSFLMATPRLMEPVYYVEIQ-TPID--CVSAIYTVLS 866