BLASTX nr result

ID: Coptis23_contig00036486 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00036486
         (373 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002328088.1| predicted protein [Populus trichocarpa] gi|2...   188   2e-55
emb|CAN61255.1| hypothetical protein VITISV_011723 [Vitis vinifera]   189   2e-55
ref|XP_003540266.1| PREDICTED: uncharacterized protein LOC100776...   193   1e-47
ref|XP_003543396.1| PREDICTED: uncharacterized protein LOC100814...   192   2e-47
ref|XP_003596937.1| Kinesin-like protein [Medicago truncatula] g...   192   2e-47

>ref|XP_002328088.1| predicted protein [Populus trichocarpa] gi|222837603|gb|EEE75968.1|
           predicted protein [Populus trichocarpa]
          Length = 1197

 Score =  188 bits (478), Expect(2) = 2e-55
 Identities = 86/93 (92%), Positives = 91/93 (97%)
 Frame = +3

Query: 93  GLPMVENCMGGYNSCMFAYGQTGSGKTHTMLGDIEGSTRRHSVNCGMTPRVFEHLFSRIQ 272
           GLPMV+NCMGGYNSCMFAYGQTGSGKTHTMLGDIEG TRRHSVNCGMTPRVFE+LFSRIQ
Sbjct: 157 GLPMVDNCMGGYNSCMFAYGQTGSGKTHTMLGDIEGGTRRHSVNCGMTPRVFEYLFSRIQ 216

Query: 273 KEKESRRDEKLKYTCKCSFLEIYNEQILDLLDP 371
           KEKE R+DEK+K+TCKCSFLEIYNEQILDLLDP
Sbjct: 217 KEKEVRKDEKIKFTCKCSFLEIYNEQILDLLDP 249



 Score = 52.4 bits (124), Expect(2) = 2e-55
 Identities = 24/32 (75%), Positives = 28/32 (87%)
 Frame = +1

Query: 1   VRQDSSQTITWSGPPESRFTFDHVADEHVTQD 96
           VRQ+S QTITW+G PESRFTFD VADE V+Q+
Sbjct: 119 VRQESCQTITWTGHPESRFTFDLVADETVSQE 150


>emb|CAN61255.1| hypothetical protein VITISV_011723 [Vitis vinifera]
          Length = 554

 Score =  189 bits (479), Expect(2) = 2e-55
 Identities = 86/93 (92%), Positives = 92/93 (98%)
 Frame = +3

Query: 93  GLPMVENCMGGYNSCMFAYGQTGSGKTHTMLGDIEGSTRRHSVNCGMTPRVFEHLFSRIQ 272
           GLPMV+NCMGGYNSCMFAYGQTGSGKTHTMLGDIEG TRRHSVNCGMTPRVFE+LFSRIQ
Sbjct: 141 GLPMVDNCMGGYNSCMFAYGQTGSGKTHTMLGDIEGGTRRHSVNCGMTPRVFEYLFSRIQ 200

Query: 273 KEKESRRDEKLKYTCKCSFLEIYNEQILDLLDP 371
           KEKE+RRDEKL++TCKCSFLEIYNEQILDLL+P
Sbjct: 201 KEKEARRDEKLRFTCKCSFLEIYNEQILDLLEP 233



 Score = 52.0 bits (123), Expect(2) = 2e-55
 Identities = 23/31 (74%), Positives = 27/31 (87%)
 Frame = +1

Query: 1   VRQDSSQTITWSGPPESRFTFDHVADEHVTQ 93
           +RQDS Q ITW+G PESRFTFD VADE+V+Q
Sbjct: 105 IRQDSCQAITWTGHPESRFTFDLVADENVSQ 135


>ref|XP_003540266.1| PREDICTED: uncharacterized protein LOC100776015 [Glycine max]
          Length = 1342

 Score =  193 bits (491), Expect = 1e-47
 Identities = 88/93 (94%), Positives = 92/93 (98%)
 Frame = +3

Query: 93  GLPMVENCMGGYNSCMFAYGQTGSGKTHTMLGDIEGSTRRHSVNCGMTPRVFEHLFSRIQ 272
           GLPMVENCMGGYNSCMFAYGQTGSGKTHTMLGDIEG TRRHSVNCGMTPR+FEHLF+RIQ
Sbjct: 149 GLPMVENCMGGYNSCMFAYGQTGSGKTHTMLGDIEGGTRRHSVNCGMTPRIFEHLFTRIQ 208

Query: 273 KEKESRRDEKLKYTCKCSFLEIYNEQILDLLDP 371
           KEKE+RRDEKLK+TCKCSFLEIYNEQILDLLDP
Sbjct: 209 KEKEARRDEKLKFTCKCSFLEIYNEQILDLLDP 241



 Score = 55.5 bits (132), Expect = 5e-06
 Identities = 27/48 (56%), Positives = 38/48 (79%)
 Frame = +1

Query: 1   VRQDSSQTITWSGPPESRFTFDHVADEHVTQDCLWWRIAWVAITVACL 144
           VRQ+SSQ ITW+G PESRFTFD VADE+V+Q+ L +++A + +   C+
Sbjct: 111 VRQESSQAITWTGHPESRFTFDLVADENVSQENL-FKVAGLPMVENCM 157


>ref|XP_003543396.1| PREDICTED: uncharacterized protein LOC100814373 [Glycine max]
          Length = 1342

 Score =  192 bits (489), Expect = 2e-47
 Identities = 87/93 (93%), Positives = 92/93 (98%)
 Frame = +3

Query: 93  GLPMVENCMGGYNSCMFAYGQTGSGKTHTMLGDIEGSTRRHSVNCGMTPRVFEHLFSRIQ 272
           GLPMVENCMGGYNSCMFAYGQTGSGKTHTMLGDIEG TRRHSVNCGMTPR+FEHLF+RIQ
Sbjct: 149 GLPMVENCMGGYNSCMFAYGQTGSGKTHTMLGDIEGGTRRHSVNCGMTPRIFEHLFTRIQ 208

Query: 273 KEKESRRDEKLKYTCKCSFLEIYNEQILDLLDP 371
           KEKE+RRDEK+K+TCKCSFLEIYNEQILDLLDP
Sbjct: 209 KEKEARRDEKIKFTCKCSFLEIYNEQILDLLDP 241


>ref|XP_003596937.1| Kinesin-like protein [Medicago truncatula]
           gi|355485985|gb|AES67188.1| Kinesin-like protein
           [Medicago truncatula]
          Length = 1364

 Score =  192 bits (488), Expect = 2e-47
 Identities = 87/93 (93%), Positives = 92/93 (98%)
 Frame = +3

Query: 93  GLPMVENCMGGYNSCMFAYGQTGSGKTHTMLGDIEGSTRRHSVNCGMTPRVFEHLFSRIQ 272
           GLPMV+NCMGGYNSCMFAYGQTGSGKTHTMLGDIEG TRRHSVNCGMTPR+FEHLFSRIQ
Sbjct: 150 GLPMVDNCMGGYNSCMFAYGQTGSGKTHTMLGDIEGGTRRHSVNCGMTPRIFEHLFSRIQ 209

Query: 273 KEKESRRDEKLKYTCKCSFLEIYNEQILDLLDP 371
           K+KE+RRDEKLK+TCKCSFLEIYNEQILDLLDP
Sbjct: 210 KDKEARRDEKLKFTCKCSFLEIYNEQILDLLDP 242



 Score = 55.8 bits (133), Expect = 4e-06
 Identities = 27/48 (56%), Positives = 38/48 (79%)
 Frame = +1

Query: 1   VRQDSSQTITWSGPPESRFTFDHVADEHVTQDCLWWRIAWVAITVACL 144
           VRQ+S QTITW+GPPE+RFTFD VADE V+Q+ L +++A + +   C+
Sbjct: 112 VRQESCQTITWTGPPEARFTFDLVADETVSQENL-FKLAGLPMVDNCM 158


Top