BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00036456
         (496 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CCA65979.1| hypothetical protein [Beta vulgaris subsp. vulga...    55   2e-07
ref|NP_189068.2| RNA-directed DNA polymerase (reverse transcript...    56   3e-06
dbj|BAD95408.1| hypothetical protein [Arabidopsis thaliana]            56   3e-06
gb|AAC95175.1| putative non-LTR retroelement reverse transcripta...    55   6e-06
dbj|BAB01344.1| reverse transcriptase-like protein [Arabidopsis ...    55   8e-06

>emb|CCA65979.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1110

 Score = 54.7 bits (130), Expect(2) = 2e-07
 Identities = 36/101 (35%), Positives = 50/101 (49%)
 Frame = -1

Query: 460  AEAILVQLVKPPITHLVLPVISSYYTEYK*LPSTY*EN*ARI*NCKAKHLSHVGRLQLIQ 281
            A+ + +QL + P  +L +P+ S   T  +  P        R     AK LS+ GRLQLI+
Sbjct: 742  ADYVHMQLGELPFRYLGVPLTSKKLTYAQCKPLVEMIT-NRAQTWMAKLLSYAGRLQLIK 800

Query: 280  SVLSCFHVYWGRTFVPPISVLDQVTKICNKFLWCGPEMQQK 158
            S+LS    YW   F     V+  V K+C KFLW G   + K
Sbjct: 801  SILSSMQNYWAHIFPLSKKVIQAVEKVCRKFLWTGKTEETK 841



 Score = 25.0 bits (53), Expect(2) = 2e-07
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = -3

Query: 122 RGGSPLHNGLNLWNQAAYSELVMKISNKPESLW 24
           RGG  + N +  WN+AA  +L+  I  K + LW
Sbjct: 856 RGGWNVIN-MKYWNRAAMLKLLWAIEFKRDKLW 887


>ref|NP_189068.2| RNA-directed DNA polymerase (reverse transcriptase)-related protein
           [Arabidopsis thaliana] gi|332643359|gb|AEE76880.1|
           RNA-directed DNA polymerase (reverse
           transcriptase)-related protein [Arabidopsis thaliana]
          Length = 746

 Score = 56.2 bits (134), Expect = 3e-06
 Identities = 32/90 (35%), Positives = 47/90 (52%)
 Frame = -1

Query: 427 PITHLVLPVISSYYTEYK*LPSTY*EN*ARI*NCKAKHLSHVGRLQLIQSVLSCFHVYWG 248
           P+ +L LP+++   T     P    +   RI    A+HLS  GRLQLI SV+     +W 
Sbjct: 24  PVRYLGLPLLTKKMTTSDYGPLVE-KIRVRIGKWTARHLSFAGRLQLISSVIHSLTNFWM 82

Query: 247 RTFVPPISVLDQVTKICNKFLWCGPEMQQK 158
             F  P + + ++  IC+ FLW GPE+  K
Sbjct: 83  SAFRLPSACIKEIDSICSSFLWSGPELNTK 112


>dbj|BAD95408.1| hypothetical protein [Arabidopsis thaliana]
          Length = 478

 Score = 56.2 bits (134), Expect = 3e-06
 Identities = 32/90 (35%), Positives = 47/90 (52%)
 Frame = -1

Query: 427 PITHLVLPVISSYYTEYK*LPSTY*EN*ARI*NCKAKHLSHVGRLQLIQSVLSCFHVYWG 248
           P+ +L LP+++   T     P    +   RI    A+HLS  GRLQLI SV+     +W 
Sbjct: 24  PVRYLGLPLLTKKMTTSDYGPLVE-KIRVRIGKWTARHLSFAGRLQLISSVIHSLTNFWM 82

Query: 247 RTFVPPISVLDQVTKICNKFLWCGPEMQQK 158
             F  P + + ++  IC+ FLW GPE+  K
Sbjct: 83  SAFRLPSACIKEIDSICSSFLWSGPELNTK 112


>gb|AAC95175.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1352

 Score = 55.1 bits (131), Expect = 6e-06
 Identities = 33/90 (36%), Positives = 51/90 (56%)
 Frame = -1

Query: 427  PITHLVLPVISSYYTEYK*LPSTY*EN*ARI*NCKAKHLSHVGRLQLIQSVLSCFHVYWG 248
            P+ +L LP+++   T+   LP    +  ARI +   + LS  GRLQLI+SVLS    +W 
Sbjct: 915  PVKYLGLPLLTKRMTQSDYLPLVE-KIRARITSWTNRFLSFAGRLQLIKSVLSSITNFWL 973

Query: 247  RTFVPPISVLDQVTKICNKFLWCGPEMQQK 158
              F  P + L ++ K+ + FLW GP++  K
Sbjct: 974  SVFRLPKACLQEIEKMFSAFLWSGPDLNTK 1003


>dbj|BAB01344.1| reverse transcriptase-like protein [Arabidopsis thaliana]
          Length = 1115

 Score = 54.7 bits (130), Expect = 8e-06
 Identities = 32/99 (32%), Positives = 52/99 (52%)
 Frame = -1

Query: 439 LVKPPITHLVLPVISSYYTEYK*LPSTY*EN*ARI*NCKAKHLSHVGRLQLIQSVLSCFH 260
           L + P+ +L LP+++   T+   L   + +   RI    +++LS  GRL LI SVL    
Sbjct: 681 LAQLPVRYLGLPLVTKRLTKED-LSPLFEQIRNRIGTWTSRYLSFAGRLNLISSVLWSTM 739

Query: 259 VYWGRTFVPPISVLDQVTKICNKFLWCGPEMQQKTCHAS 143
            +W   F  P + L ++  IC+ FLW GPE+ ++    S
Sbjct: 740 NFWMSAFRLPSACLKEINSICSAFLWSGPELNRRKAKVS 778