BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00036429
         (533 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002531691.1| pentatricopeptide repeat-containing protein,...   153   1e-35
ref|XP_003633340.1| PREDICTED: pentatricopeptide repeat-containi...   153   2e-35
ref|XP_002329535.1| predicted protein [Populus trichocarpa] gi|2...   149   3e-34
ref|XP_002533966.1| pentatricopeptide repeat-containing protein,...   147   1e-33
ref|XP_004144616.1| PREDICTED: pentatricopeptide repeat-containi...   146   2e-33

>ref|XP_002531691.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223528667|gb|EEF30682.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 434

 Score =  153 bits (387), Expect = 1e-35
 Identities = 73/198 (36%), Positives = 116/198 (58%), Gaps = 23/198 (11%)
 Frame = -1

Query: 530 YNAMIKGYSLNDFHQDALTLYTNEIHI-----------------------GKELHGLVLK 420
           YN +IK Y  N    DA+TL++  +H                        GK++HGLVLK
Sbjct: 76  YNILIKCYIQNQLSHDAITLFSQLLHEFNPDGFTLPCVIKGCARLHATKEGKQIHGLVLK 135

Query: 419 MGCAERLIVQTAFIDMYCACGLSSYGRFVFDKIVHKDVICWNTMIAGYIKCGEYG*AKEV 240
           +G      V ++ ++MY  C      + VF  +  KD++ WN++I GY+KCG+     ++
Sbjct: 136 LGFGLNKFVSSSLVNMYSKCKDIDSAKKVFLSMDDKDLVSWNSLIDGYVKCGQVELGMKL 195

Query: 239 FELMPVRNVSSWNTIVDMYCKCGDMEMARKLFEDMPEKDVISWNALISGYAKIGESGEMR 60
           FE MP R++ SW  ++D + KCG +++AR+LF+ MP ++++SWNA+I+GY K G+     
Sbjct: 196 FEEMPERDLFSWTVLIDGFSKCGKVDVARELFDKMPSRNLVSWNAMINGYMKAGDFVLAS 255

Query: 59  RLFDEMPRKNVVSWNVMI 6
            LFD+MP KN++SWN M+
Sbjct: 256 ELFDKMPEKNLISWNSMV 273



 Score = 69.3 bits (168), Expect = 3e-10
 Identities = 38/110 (34%), Positives = 61/110 (55%), Gaps = 7/110 (6%)
 Frame = -1

Query: 389 TAFIDMYCACGLSSYGRFVFDKIVHKDVICWNTMIAGYIKCGEYG*AKEVFELMPVRNVS 210
           T  ID +  CG     R +FDK+  ++++ WN MI GY+K G++  A E+F+ MP +N+ 
Sbjct: 208 TVLIDGFSKCGKVDVARELFDKMPSRNLVSWNAMINGYMKAGDFVLASELFDKMPEKNLI 267

Query: 209 SWNTIVDMYCKCGDMEMARKLFEDMPEKD-------VISWNALISGYAKI 81
           SWN++V  Y      + A  LF  M E+D       ++S  + +SG A +
Sbjct: 268 SWNSMVAGYDLNERFKEALDLFLTMLERDFTPNHATLVSTFSAVSGLASL 317


>ref|XP_003633340.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 679

 Score =  153 bits (386), Expect = 2e-35
 Identities = 77/198 (38%), Positives = 113/198 (57%), Gaps = 23/198 (11%)
 Frame = -1

Query: 530 YNAMIKGYSLNDFHQDALTLYTNEIHI-----------------------GKELHGLVLK 420
           +N +IK Y  N F  D + L+   +H                        GK++HGL LK
Sbjct: 81  WNTIIKCYVENQFSHDGIVLFHELVHEYLPDNFTLPCVIKGCARLGVVQEGKQIHGLALK 140

Query: 419 MGCAERLIVQTAFIDMYCACGLSSYGRFVFDKIVHKDVICWNTMIAGYIKCGEYG*AKEV 240
           +G    + VQ + ++MY  CG     R VFD ++ KDV+ WN++I GY +CGE   A ++
Sbjct: 141 IGFGSDVFVQGSLVNMYSKCGEIDCARKVFDGMIDKDVVLWNSLIDGYARCGEIDIALQL 200

Query: 239 FELMPVRNVSSWNTIVDMYCKCGDMEMARKLFEDMPEKDVISWNALISGYAKIGESGEMR 60
           FE MP R+  SW  +VD   KCG +E ARKLF+ MP ++++SWNA+I+GY K G+     
Sbjct: 201 FEEMPERDAFSWTVLVDGLSKCGKVESARKLFDQMPCRNLVSWNAMINGYMKSGDFDSAL 260

Query: 59  RLFDEMPRKNVVSWNVMI 6
            LF +MP  ++V+WN+MI
Sbjct: 261 ELFYQMPIWDLVTWNLMI 278



 Score = 57.4 bits (137), Expect = 1e-06
 Identities = 33/112 (29%), Positives = 58/112 (51%), Gaps = 7/112 (6%)
 Frame = -1

Query: 389 TAFIDMYCACGLSSYGRFVFDKIVHKDVICWNTMIAGYIKCGEYG*AKEVFELMPVRNVS 210
           T  +D    CG     R +FD++  ++++ WN MI GY+K G++  A E+F  MP+ ++ 
Sbjct: 213 TVLVDGLSKCGKVESARKLFDQMPCRNLVSWNAMINGYMKSGDFDSALELFYQMPIWDLV 272

Query: 209 SWNTIVDMYCKCGDMEMARKLFEDM-------PEKDVISWNALISGYAKIGE 75
           +WN ++  Y   G    A K+F  M           ++S  + +SG A +G+
Sbjct: 273 TWNLMIAGYELNGQFMDAVKMFFMMLKLGSRPSHATLVSVLSAVSGLAVLGK 324


>ref|XP_002329535.1| predicted protein [Populus trichocarpa] gi|222870244|gb|EEF07375.1|
           predicted protein [Populus trichocarpa]
          Length = 617

 Score =  149 bits (375), Expect = 3e-34
 Identities = 69/148 (46%), Positives = 99/148 (66%)
 Frame = -1

Query: 449 GKELHGLVLKMGCAERLIVQTAFIDMYCACGLSSYGRFVFDKIVHKDVICWNTMIAGYIK 270
           G+++H LV+K G    L V+ +FI  Y  CG +S  R VFD     D++ WN+MI GY+K
Sbjct: 177 GQKVHALVVKFGFELDLFVRNSFIRFYSVCGRTSDARMVFDNGFVLDLVSWNSMIDGYVK 236

Query: 269 CGEYG*AKEVFELMPVRNVSSWNTIVDMYCKCGDMEMARKLFEDMPEKDVISWNALISGY 90
            GE G A+E+F+ M  R++ +WN+++  Y   GDME AR LF+ MP +DV+SWN +I G+
Sbjct: 237 NGELGLAREIFDEMYERDIFTWNSMISGYVGVGDMEAARGLFDKMPSRDVVSWNCMIDGF 296

Query: 89  AKIGESGEMRRLFDEMPRKNVVSWNVMI 6
           A+I +     + FDEMP +NVVSWNVM+
Sbjct: 297 ARIKDVSMAAKFFDEMPLRNVVSWNVML 324



 Score = 79.7 bits (195), Expect = 2e-13
 Identities = 57/214 (26%), Positives = 92/214 (42%), Gaps = 39/214 (18%)
 Frame = -1

Query: 530 YNAMIKGYSLNDFHQDALTLYTNEIHIGKELHGLVLKMGCAERLIVQTAFIDMYCACGLS 351
           +N+MI GY  N            E+ + +E+   + +      +    + I  Y   G  
Sbjct: 227 WNSMIDGYVKN-----------GELGLAREIFDEMYERD----IFTWNSMISGYVGVGDM 271

Query: 350 SYGRFVFDKIVHKDVICWNTMIAGYIKCGEYG*AKEVFELMPVRNVSSWNTIVDMYCKCG 171
              R +FDK+  +DV+ WN MI G+ +  +   A + F+ MP+RNV SWN ++ +Y +C 
Sbjct: 272 EAARGLFDKMPSRDVVSWNCMIDGFARIKDVSMAAKFFDEMPLRNVVSWNVMLALYLRCK 331

Query: 170 DMEMARKLFEDM------PEK---------------------------------DVISWN 108
                 + F+ M      P++                                 D++   
Sbjct: 332 KYSDCLRFFDMMVGGDFVPDEASLVSVLTACAELKMLDQGKWVHSYMKDNGIKPDMLLST 391

Query: 107 ALISGYAKIGESGEMRRLFDEMPRKNVVSWNVMI 6
           AL++ YAK G     R +FD+MP K+VVSWN MI
Sbjct: 392 ALLTMYAKCGAMDLAREVFDKMPEKSVVSWNSMI 425



 Score = 62.0 bits (149), Expect = 5e-08
 Identities = 27/67 (40%), Positives = 42/67 (62%)
 Frame = -1

Query: 203 NTIVDMYCKCGDMEMARKLFEDMPEKDVISWNALISGYAKIGESGEMRRLFDEMPRKNVV 24
           N+ +  Y  CG    AR +F++    D++SWN++I GY K GE G  R +FDEM  +++ 
Sbjct: 197 NSFIRFYSVCGRTSDARMVFDNGFVLDLVSWNSMIDGYVKNGELGLAREIFDEMYERDIF 256

Query: 23  SWNVMIT 3
           +WN MI+
Sbjct: 257 TWNSMIS 263


>ref|XP_002533966.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223526049|gb|EEF28413.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 515

 Score =  147 bits (371), Expect = 1e-33
 Identities = 75/199 (37%), Positives = 111/199 (55%), Gaps = 24/199 (12%)
 Frame = -1

Query: 530 YNAMIKGYSLNDFHQDALTLYTNEIHI------------------------GKELHGLVL 423
           +NAM+KGYSLND H++ + L+   I +                        G+ELH  V+
Sbjct: 132 WNAMLKGYSLNDSHREVIVLFRKMISMDILPNCFSFPIVIKSSVKINAFKEGEELHCFVI 191

Query: 422 KMGCAERLIVQTAFIDMYCACGLSSYGRFVFDKIVHKDVICWNTMIAGYIKCGEYG*AKE 243
           K GC     V T  ID+Y +  +      VF +++ ++V+ W +MI G+I C +   A+ 
Sbjct: 192 KSGCRANPFVGTMLIDLYSSGRMIVSAYRVFGEMIERNVVAWTSMIKGFILCNDIETARR 251

Query: 242 VFELMPVRNVSSWNTIVDMYCKCGDMEMARKLFEDMPEKDVISWNALISGYAKIGESGEM 63
           +FEL P R+V  WN ++  Y   GD+  A++LF  MP KDV+SWN L++GYA  G+    
Sbjct: 252 LFELAPQRDVVLWNIMISGYIDIGDLVRAQELFHKMPNKDVMSWNTLLNGYANGGDIEAC 311

Query: 62  RRLFDEMPRKNVVSWNVMI 6
            RLF+EMP +NV SWN +I
Sbjct: 312 ERLFEEMPERNVFSWNGLI 330



 Score = 58.9 bits (141), Expect = 4e-07
 Identities = 37/109 (33%), Positives = 55/109 (50%), Gaps = 4/109 (3%)
 Frame = -1

Query: 356 LSSYGRFVFDKIVHKDVICWNTMIAGYIKCGEYG*AKEVFELMPVR----NVSSWNTIVD 189
           LSS+ R + D IV  +     T+++   + G     K V           NV   N ++D
Sbjct: 343 LSSFKRMLVDGIVVPNDATLVTVLSACARLGALDLGKWVHMYAQSNGYKGNVYIGNALID 402

Query: 188 MYCKCGDMEMARKLFEDMPEKDVISWNALISGYAKIGESGEMRRLFDEM 42
           MY KCG++E A  +F+ + +KD+ISWN LI G A  G + +   LF  M
Sbjct: 403 MYAKCGNVENAIVVFKSLDKKDLISWNTLIGGLAVHGRAADALYLFSRM 451


>ref|XP_004144616.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
           gi|449511814|ref|XP_004164061.1| PREDICTED:
           pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 681

 Score =  146 bits (369), Expect = 2e-33
 Identities = 73/175 (41%), Positives = 107/175 (61%), Gaps = 8/175 (4%)
 Frame = -1

Query: 503 LNDFHQDALTL--------YTNEIHIGKELHGLVLKMGCAERLIVQTAFIDMYCACGLSS 348
           L DF  D+ TL            +  GK++HGLVLK+G      V ++ + MY  CG   
Sbjct: 107 LCDFVPDSFTLPCVLKGCARLGALQEGKQIHGLVLKIGFGVDKFVLSSLVSMYSKCGEIE 166

Query: 347 YGRFVFDKIVHKDVICWNTMIAGYIKCGEYG*AKEVFELMPVRNVSSWNTIVDMYCKCGD 168
             R VFD++  KDV+ WN++I GY +CGE   A E+FE MP ++  SW  ++D   K G 
Sbjct: 167 LCRKVFDRMEDKDVVSWNSLIDGYARCGEIELALEMFEEMPEKDSFSWTILIDGLSKSGK 226

Query: 167 MEMARKLFEDMPEKDVISWNALISGYAKIGESGEMRRLFDEMPRKNVVSWNVMIT 3
           +E AR +F+ MP ++ +SWNA+I+GY K G+S   + LFD+MP +++V+WN MIT
Sbjct: 227 LEAARDVFDRMPIRNSVSWNAMINGYMKAGDSNTAKELFDQMPERSLVTWNSMIT 281



 Score = 64.3 bits (155), Expect = 1e-08
 Identities = 33/90 (36%), Positives = 51/90 (56%)
 Frame = -1

Query: 389 TAFIDMYCACGLSSYGRFVFDKIVHKDVICWNTMIAGYIKCGEYG*AKEVFELMPVRNVS 210
           T  ID     G     R VFD++  ++ + WN MI GY+K G+   AKE+F+ MP R++ 
Sbjct: 215 TILIDGLSKSGKLEAARDVFDRMPIRNSVSWNAMINGYMKAGDSNTAKELFDQMPERSLV 274

Query: 209 SWNTIVDMYCKCGDMEMARKLFEDMPEKDV 120
           +WN+++  Y +      A KLFE M  +D+
Sbjct: 275 TWNSMITGYERNKQFTKALKLFEVMLREDI 304