BLASTX nr result
ID: Coptis23_contig00036388
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis23_contig00036388
(399 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002332237.1| predicted protein [Populus trichocarpa] gi|2... 209 2e-52
emb|CBI33742.3| unnamed protein product [Vitis vinifera] 192 2e-47
ref|XP_002279137.1| PREDICTED: pentatricopeptide repeat-containi... 192 2e-47
emb|CAN77232.1| hypothetical protein VITISV_001089 [Vitis vinifera] 189 3e-46
ref|XP_003550993.1| PREDICTED: pentatricopeptide repeat-containi... 185 3e-45
>ref|XP_002332237.1| predicted protein [Populus trichocarpa] gi|222831850|gb|EEE70327.1|
predicted protein [Populus trichocarpa]
Length = 444
Score = 209 bits (532), Expect = 2e-52
Identities = 99/132 (75%), Positives = 114/132 (86%)
Frame = -1
Query: 399 YAMHGHSQDALELFSRMLALRLQPTDITFIGVLSACSHAGLVVDGRRFFNSMKEAYGIEP 220
YAMHG SQDAL LF M + QPTDITFIGVL+ACSHAGLV +G +FF SMK+ YGIEP
Sbjct: 148 YAMHGFSQDALRLFKEMCMIGYQPTDITFIGVLNACSHAGLVSEGWKFFYSMKDEYGIEP 207
Query: 219 KVEHYGCMVDLLGRAGFLDEAYELVKCMKMDPDPVLWGTLLASCRLHGNMALGEHIAEFL 40
KVEHYGCMV+LLGRAG+L+EAYELVK M++D DPVLWGTLL +CRLHGN+ALGE IAE+L
Sbjct: 208 KVEHYGCMVNLLGRAGYLEEAYELVKNMEIDQDPVLWGTLLGACRLHGNIALGEQIAEYL 267
Query: 39 VNNGLANSGTYI 4
V+ LANSGTY+
Sbjct: 268 VSQNLANSGTYV 279
Score = 58.5 bits (140), Expect = 5e-07
Identities = 35/108 (32%), Positives = 57/108 (52%)
Frame = -1
Query: 399 YAMHGHSQDALELFSRMLALRLQPTDITFIGVLSACSHAGLVVDGRRFFNSMKEAYGIEP 220
YA HG + L LF +ML +++P ++T + VLSAC G + G R+ +S E GI
Sbjct: 47 YAQHGLPNEGLLLFRQMLNAKVRPNEVTVLAVLSACGQTGALETG-RWVHSYIENNGIGI 105
Query: 219 KVEHYGCMVDLLGRAGFLDEAYELVKCMKMDPDPVLWGTLLASCRLHG 76
V ++D+ + G L++A LV + D V W +++ +HG
Sbjct: 106 NVRVGTSLIDMYSKCGSLEDA-RLVFERISNKDVVAWNSMVVGYAMHG 152
>emb|CBI33742.3| unnamed protein product [Vitis vinifera]
Length = 562
Score = 192 bits (488), Expect = 2e-47
Identities = 89/132 (67%), Positives = 107/132 (81%)
Frame = -1
Query: 399 YAMHGHSQDALELFSRMLALRLQPTDITFIGVLSACSHAGLVVDGRRFFNSMKEAYGIEP 220
YAMHG SQ+AL+LF M + L PT+ITFIG+LSAC H+G V +G FN MK+ YGIEP
Sbjct: 266 YAMHGFSQEALQLFKSMCRMGLHPTNITFIGILSACGHSGWVTEGWDIFNKMKDEYGIEP 325
Query: 219 KVEHYGCMVDLLGRAGFLDEAYELVKCMKMDPDPVLWGTLLASCRLHGNMALGEHIAEFL 40
K+EHYGCMV+LLGRAG +++AYELVK M ++PDPVLWGTLL +CRLHG +ALGE I E L
Sbjct: 326 KIEHYGCMVNLLGRAGHVEQAYELVKNMNIEPDPVLWGTLLGACRLHGKIALGEKIVELL 385
Query: 39 VNNGLANSGTYI 4
V+ LANSGTYI
Sbjct: 386 VDQNLANSGTYI 397
Score = 61.6 bits (148), Expect = 6e-08
Identities = 37/108 (34%), Positives = 57/108 (52%)
Frame = -1
Query: 399 YAMHGHSQDALELFSRMLALRLQPTDITFIGVLSACSHAGLVVDGRRFFNSMKEAYGIEP 220
Y +G +AL LF RML + +P ++T + VLSAC G + G R+ +S E GI+
Sbjct: 165 YTQNGMPNEALVLFRRMLKAKAKPNEVTVLSVLSACGQLGALESG-RWVHSYIENNGIQF 223
Query: 219 KVEHYGCMVDLLGRAGFLDEAYELVKCMKMDPDPVLWGTLLASCRLHG 76
V +VD+ + G L++A LV D D V W +++ +HG
Sbjct: 224 NVHVGTALVDMYSKCGSLEDA-RLVFDKIDDKDVVAWNSMIVGYAMHG 270
>ref|XP_002279137.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
chloroplastic-like [Vitis vinifera]
Length = 628
Score = 192 bits (488), Expect = 2e-47
Identities = 89/132 (67%), Positives = 107/132 (81%)
Frame = -1
Query: 399 YAMHGHSQDALELFSRMLALRLQPTDITFIGVLSACSHAGLVVDGRRFFNSMKEAYGIEP 220
YAMHG SQ+AL+LF M + L PT+ITFIG+LSAC H+G V +G FN MK+ YGIEP
Sbjct: 332 YAMHGFSQEALQLFKSMCRMGLHPTNITFIGILSACGHSGWVTEGWDIFNKMKDEYGIEP 391
Query: 219 KVEHYGCMVDLLGRAGFLDEAYELVKCMKMDPDPVLWGTLLASCRLHGNMALGEHIAEFL 40
K+EHYGCMV+LLGRAG +++AYELVK M ++PDPVLWGTLL +CRLHG +ALGE I E L
Sbjct: 392 KIEHYGCMVNLLGRAGHVEQAYELVKNMNIEPDPVLWGTLLGACRLHGKIALGEKIVELL 451
Query: 39 VNNGLANSGTYI 4
V+ LANSGTYI
Sbjct: 452 VDQNLANSGTYI 463
Score = 61.6 bits (148), Expect = 6e-08
Identities = 37/108 (34%), Positives = 57/108 (52%)
Frame = -1
Query: 399 YAMHGHSQDALELFSRMLALRLQPTDITFIGVLSACSHAGLVVDGRRFFNSMKEAYGIEP 220
Y +G +AL LF RML + +P ++T + VLSAC G + G R+ +S E GI+
Sbjct: 231 YTQNGMPNEALVLFRRMLKAKAKPNEVTVLSVLSACGQLGALESG-RWVHSYIENNGIQF 289
Query: 219 KVEHYGCMVDLLGRAGFLDEAYELVKCMKMDPDPVLWGTLLASCRLHG 76
V +VD+ + G L++A LV D D V W +++ +HG
Sbjct: 290 NVHVGTALVDMYSKCGSLEDA-RLVFDKIDDKDVVAWNSMIVGYAMHG 336
>emb|CAN77232.1| hypothetical protein VITISV_001089 [Vitis vinifera]
Length = 575
Score = 189 bits (479), Expect = 3e-46
Identities = 88/132 (66%), Positives = 106/132 (80%)
Frame = -1
Query: 399 YAMHGHSQDALELFSRMLALRLQPTDITFIGVLSACSHAGLVVDGRRFFNSMKEAYGIEP 220
YAM G SQ+AL+LF M + L PT+ITFIG+LSAC H+G V +G FN MK+ YGIEP
Sbjct: 279 YAMXGFSQEALQLFKSMCRMGLHPTNITFIGILSACGHSGWVTEGWDIFNKMKDEYGIEP 338
Query: 219 KVEHYGCMVDLLGRAGFLDEAYELVKCMKMDPDPVLWGTLLASCRLHGNMALGEHIAEFL 40
K+EHYGCMV+LLGRAG +++AYELVK M ++PDPVLWGTLL +CRLHG +ALGE I E L
Sbjct: 339 KIEHYGCMVNLLGRAGHVEQAYELVKNMNIEPDPVLWGTLLGACRLHGKIALGEKIVELL 398
Query: 39 VNNGLANSGTYI 4
V+ LANSGTYI
Sbjct: 399 VDQNLANSGTYI 410
Score = 58.2 bits (139), Expect = 7e-07
Identities = 36/108 (33%), Positives = 56/108 (51%)
Frame = -1
Query: 399 YAMHGHSQDALELFSRMLALRLQPTDITFIGVLSACSHAGLVVDGRRFFNSMKEAYGIEP 220
Y +G +AL LF RML + +P ++T + VLSAC G + G R+ +S E GI+
Sbjct: 178 YTQNGMPNEALVLFRRMLKAKAKPNEVTVLSVLSACGQLGALESG-RWVHSYIENNGIQF 236
Query: 219 KVEHYGCMVDLLGRAGFLDEAYELVKCMKMDPDPVLWGTLLASCRLHG 76
V +VD+ + G L++A LV D D V W +++ + G
Sbjct: 237 NVHVGTALVDMYSKCGSLEDA-RLVFDKIDDKDVVAWNSMIVGYAMXG 283
>ref|XP_003550993.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
chloroplastic-like [Glycine max]
Length = 628
Score = 185 bits (470), Expect = 3e-45
Identities = 83/132 (62%), Positives = 110/132 (83%)
Frame = -1
Query: 399 YAMHGHSQDALELFSRMLALRLQPTDITFIGVLSACSHAGLVVDGRRFFNSMKEAYGIEP 220
Y +HG S +AL+LF M + ++P+DITF+ VL+AC+HAGLV G F+SMK+ YG+EP
Sbjct: 332 YGIHGFSDEALQLFHEMCCIGVKPSDITFVAVLTACAHAGLVSKGWEVFDSMKDGYGMEP 391
Query: 219 KVEHYGCMVDLLGRAGFLDEAYELVKCMKMDPDPVLWGTLLASCRLHGNMALGEHIAEFL 40
KVEHYGCMV+LLGRAG + EAY+LV+ M+++PDPVLWGTLL +CR+H N++LGE IAE L
Sbjct: 392 KVEHYGCMVNLLGRAGRMQEAYDLVRSMEVEPDPVLWGTLLWACRIHSNVSLGEEIAEIL 451
Query: 39 VNNGLANSGTYI 4
V+NGLA+SGTY+
Sbjct: 452 VSNGLASSGTYV 463