BLASTX nr result

ID: Coptis23_contig00036383 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00036383
         (583 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002509449.1| Mitochondrial carnitine/acylcarnitine carrie...   131   9e-29
gb|AFK37339.1| unknown [Lotus japonicus]                              130   2e-28
ref|XP_002280023.1| PREDICTED: mitochondrial substrate carrier f...   129   4e-28
emb|CAN59792.1| hypothetical protein VITISV_001900 [Vitis vinifera]   129   4e-28
ref|XP_002329828.1| predicted protein [Populus trichocarpa] gi|2...   126   3e-27

>ref|XP_002509449.1| Mitochondrial carnitine/acylcarnitine carrier protein, putative
           [Ricinus communis] gi|223549348|gb|EEF50836.1|
           Mitochondrial carnitine/acylcarnitine carrier protein,
           putative [Ricinus communis]
          Length = 269

 Score =  131 bits (329), Expect = 9e-29
 Identities = 62/83 (74%), Positives = 69/83 (83%)
 Frame = -2

Query: 582 GVAGVAFWLAVLPLDVAKTIIQTVPDTSSSRNPLLTLQSIYKTTGFRGCYAGLGPTLVRA 403
           G+ GVAFW AVLPLDVAKT+IQT PD S +RNP   L SIY+  G RGCYAGLGPT+VRA
Sbjct: 187 GLGGVAFWSAVLPLDVAKTVIQTAPDKSFTRNPFRVLNSIYRRAGLRGCYAGLGPTIVRA 246

Query: 402 FPANAAAIVTWELAAKVLGIKRE 334
           FPANAAAIVTWELA KVLGI+ +
Sbjct: 247 FPANAAAIVTWELAMKVLGIRHD 269


>gb|AFK37339.1| unknown [Lotus japonicus]
          Length = 256

 Score =  130 bits (326), Expect = 2e-28
 Identities = 61/83 (73%), Positives = 69/83 (83%)
 Frame = -2

Query: 582 GVAGVAFWLAVLPLDVAKTIIQTVPDTSSSRNPLLTLQSIYKTTGFRGCYAGLGPTLVRA 403
           GV+G+AFWLAVLPLDVAKT+IQT PD +S RNP + L SIYK  G +GCY GLGPTL RA
Sbjct: 174 GVSGIAFWLAVLPLDVAKTLIQTNPDKNSQRNPFVILSSIYKRAGLKGCYTGLGPTLSRA 233

Query: 402 FPANAAAIVTWELAAKVLGIKRE 334
           FPANAA IVTWELA K+LGIK +
Sbjct: 234 FPANAATIVTWELALKMLGIKHD 256


>ref|XP_002280023.1| PREDICTED: mitochondrial substrate carrier family protein S [Vitis
           vinifera] gi|297740410|emb|CBI30592.3| unnamed protein
           product [Vitis vinifera]
          Length = 303

 Score =  129 bits (324), Expect = 4e-28
 Identities = 62/83 (74%), Positives = 68/83 (81%)
 Frame = -2

Query: 582 GVAGVAFWLAVLPLDVAKTIIQTVPDTSSSRNPLLTLQSIYKTTGFRGCYAGLGPTLVRA 403
           G+ GVAFW AVLPLDVAKTIIQT  D SS++NP   L SIY+  G RGCY GLGPT+ RA
Sbjct: 221 GLGGVAFWSAVLPLDVAKTIIQTASDKSSTKNPFRILNSIYRRAGLRGCYTGLGPTIARA 280

Query: 402 FPANAAAIVTWELAAKVLGIKRE 334
           FPANAAAIVTWELA K+LGIKRE
Sbjct: 281 FPANAAAIVTWELAIKLLGIKRE 303


>emb|CAN59792.1| hypothetical protein VITISV_001900 [Vitis vinifera]
          Length = 270

 Score =  129 bits (324), Expect = 4e-28
 Identities = 62/83 (74%), Positives = 68/83 (81%)
 Frame = -2

Query: 582 GVAGVAFWLAVLPLDVAKTIIQTVPDTSSSRNPLLTLQSIYKTTGFRGCYAGLGPTLVRA 403
           G+ GVAFW AVLPLDVAKTIIQT  D SS++NP   L SIY+  G RGCY GLGPT+ RA
Sbjct: 188 GLGGVAFWSAVLPLDVAKTIIQTASDKSSTKNPFRILNSIYRRAGLRGCYTGLGPTIARA 247

Query: 402 FPANAAAIVTWELAAKVLGIKRE 334
           FPANAAAIVTWELA K+LGIKRE
Sbjct: 248 FPANAAAIVTWELAIKLLGIKRE 270


>ref|XP_002329828.1| predicted protein [Populus trichocarpa] gi|222870890|gb|EEF08021.1|
           predicted protein [Populus trichocarpa]
          Length = 302

 Score =  126 bits (316), Expect = 3e-27
 Identities = 60/81 (74%), Positives = 66/81 (81%)
 Frame = -2

Query: 582 GVAGVAFWLAVLPLDVAKTIIQTVPDTSSSRNPLLTLQSIYKTTGFRGCYAGLGPTLVRA 403
           G++GVAFW AVLPLDVAKTIIQT PD SS+RNP   L SIY   G +GCY G GPT+VRA
Sbjct: 221 GLSGVAFWSAVLPLDVAKTIIQTAPDKSSTRNPFAVLNSIYSRAGLKGCYTGFGPTIVRA 280

Query: 402 FPANAAAIVTWELAAKVLGIK 340
           FPANAAAIVTWELA K+LG K
Sbjct: 281 FPANAAAIVTWELAMKMLGDK 301


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