BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00036382
         (322 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAN80769.1| hypothetical protein VITISV_013866 [Vitis vinifera]   144   6e-33
gb|AAF43948.1|AC012188_25 Contains similarity to a hypothetical ...   139   2e-31
ref|NP_172899.1| pentatricopeptide repeat-containing protein [Ar...   139   2e-31
ref|XP_003518295.1| PREDICTED: pentatricopeptide repeat-containi...   139   2e-31
ref|XP_002519368.1| pentatricopeptide repeat-containing protein,...   139   2e-31

>emb|CAN80769.1| hypothetical protein VITISV_013866 [Vitis vinifera]
          Length = 761

 Score =  144 bits (364), Expect = 6e-33
 Identities = 68/107 (63%), Positives = 88/107 (82%)
 Frame = -1

Query: 322 VICSCSEQGDPHLAKSLVGSLDWRKVNLNFFVKTALLDMYAKCGDITTAVQIFEEMGTHR 143
           VI +CS +GDP LA SLV +L  +++ LN FV+TALLDMYAKCG I  A +IF+E+G +R
Sbjct: 266 VISACSSRGDPCLAASLVRTLHQKQIQLNCFVRTALLDMYAKCGSIGAARRIFDELGAYR 325

Query: 142 TTVSWNAMISAYTRMGGLESARKLFDEMPEKNAVSWNSMIAGYSQNG 2
            +V+WNAMISAYTR+G L+SAR+LF+ MP +N V+WNSMIAGY+QNG
Sbjct: 326 NSVTWNAMISAYTRVGNLDSARELFNTMPGRNVVTWNSMIAGYAQNG 372



 Score = 72.0 bits (175), Expect = 5e-11
 Identities = 36/109 (33%), Positives = 59/109 (54%), Gaps = 32/109 (29%)
 Frame = -1

Query: 232 FVKTALLDMYAKCGDITTAVQIFEEMGTH------------------------------- 146
           FV+ A++DMYA+ G I  A ++F+E+  +                               
Sbjct: 131 FVRNAVIDMYARLGPIGHARKVFDEIPDYERKVADWNAMVSGYWKWESEGQAQWLFDVMP 190

Query: 145 -RTTVSWNAMISAYTRMGGLESARKLFDEMPEKNAVSWNSMIAGYSQNG 2
            R  ++W AM++ Y ++  LE+AR+ FD MPE++ VSWN+M++GY+QNG
Sbjct: 191 ERNVITWTAMVTGYAKVKDLEAARRYFDCMPERSVVSWNAMLSGYAQNG 239


>gb|AAF43948.1|AC012188_25 Contains similarity to a hypothetical protein from Arabidopsis
           thaliana gb|AC004044.1 and contains two domains PF|01535
           of unknown function [Arabidopsis thaliana]
          Length = 455

 Score =  139 bits (350), Expect = 2e-31
 Identities = 66/107 (61%), Positives = 84/107 (78%)
 Frame = -1

Query: 322 VICSCSEQGDPHLAKSLVGSLDWRKVNLNFFVKTALLDMYAKCGDITTAVQIFEEMGTHR 143
           VI +CS + DP L +SLV  +D ++V LN FVKTALLDM+AKC DI +A +IF E+GT R
Sbjct: 185 VISACSFRADPSLTRSLVKLIDEKRVRLNCFVKTALLDMHAKCRDIQSARRIFNELGTQR 244

Query: 142 TTVSWNAMISAYTRMGGLESARKLFDEMPEKNAVSWNSMIAGYSQNG 2
             V+WNAMIS YTR+G + SAR+LFD MP++N VSWNS+IAGY+ NG
Sbjct: 245 NLVTWNAMISGYTRIGDMSSARQLFDTMPKRNVVSWNSLIAGYAHNG 291



 Score = 69.3 bits (168), Expect = 3e-10
 Identities = 32/72 (44%), Positives = 48/72 (66%)
 Frame = -1

Query: 217 LLDMYAKCGDITTAVQIFEEMGTHRTTVSWNAMISAYTRMGGLESARKLFDEMPEKNAVS 38
           ++  Y K G+   A ++F+ M      VSW  MI+ + ++  LE+ARK FD MPEK+ VS
Sbjct: 88  MISGYWKWGNKEEACKLFDMM-PENDVVSWTVMITGFAKVKDLENARKYFDRMPEKSVVS 146

Query: 37  WNSMIAGYSQNG 2
           WN+M++GY+QNG
Sbjct: 147 WNAMLSGYAQNG 158



 Score = 65.9 bits (159), Expect = 3e-09
 Identities = 30/75 (40%), Positives = 47/75 (62%)
 Frame = -1

Query: 232 FVKTALLDMYAKCGDITTAVQIFEEMGTHRTTVSWNAMISAYTRMGGLESARKLFDEMPE 53
           +V+  ++DMY K   + +A ++F+++ + R    WN MIS Y + G  E A KLFD MPE
Sbjct: 52  YVRNVIMDMYVKHESVESARKVFDQI-SQRKGSDWNVMISGYWKWGNKEEACKLFDMMPE 110

Query: 52  KNAVSWNSMIAGYSQ 8
            + VSW  MI G+++
Sbjct: 111 NDVVSWTVMITGFAK 125


>ref|NP_172899.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|193806395|sp|Q9M9R6.2|PPR43_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At1g14470 gi|332191047|gb|AEE29168.1| pentatricopeptide
           repeat-containing protein [Arabidopsis thaliana]
          Length = 540

 Score =  139 bits (350), Expect = 2e-31
 Identities = 66/107 (61%), Positives = 84/107 (78%)
 Frame = -1

Query: 322 VICSCSEQGDPHLAKSLVGSLDWRKVNLNFFVKTALLDMYAKCGDITTAVQIFEEMGTHR 143
           VI +CS + DP L +SLV  +D ++V LN FVKTALLDM+AKC DI +A +IF E+GT R
Sbjct: 270 VISACSFRADPSLTRSLVKLIDEKRVRLNCFVKTALLDMHAKCRDIQSARRIFNELGTQR 329

Query: 142 TTVSWNAMISAYTRMGGLESARKLFDEMPEKNAVSWNSMIAGYSQNG 2
             V+WNAMIS YTR+G + SAR+LFD MP++N VSWNS+IAGY+ NG
Sbjct: 330 NLVTWNAMISGYTRIGDMSSARQLFDTMPKRNVVSWNSLIAGYAHNG 376



 Score = 69.3 bits (168), Expect = 3e-10
 Identities = 32/72 (44%), Positives = 48/72 (66%)
 Frame = -1

Query: 217 LLDMYAKCGDITTAVQIFEEMGTHRTTVSWNAMISAYTRMGGLESARKLFDEMPEKNAVS 38
           ++  Y K G+   A ++F+ M      VSW  MI+ + ++  LE+ARK FD MPEK+ VS
Sbjct: 173 MISGYWKWGNKEEACKLFDMM-PENDVVSWTVMITGFAKVKDLENARKYFDRMPEKSVVS 231

Query: 37  WNSMIAGYSQNG 2
           WN+M++GY+QNG
Sbjct: 232 WNAMLSGYAQNG 243



 Score = 65.9 bits (159), Expect = 3e-09
 Identities = 30/75 (40%), Positives = 47/75 (62%)
 Frame = -1

Query: 232 FVKTALLDMYAKCGDITTAVQIFEEMGTHRTTVSWNAMISAYTRMGGLESARKLFDEMPE 53
           +V+  ++DMY K   + +A ++F+++ + R    WN MIS Y + G  E A KLFD MPE
Sbjct: 137 YVRNVIMDMYVKHESVESARKVFDQI-SQRKGSDWNVMISGYWKWGNKEEACKLFDMMPE 195

Query: 52  KNAVSWNSMIAGYSQ 8
            + VSW  MI G+++
Sbjct: 196 NDVVSWTVMITGFAK 210


>ref|XP_003518295.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g14470-like [Glycine max]
          Length = 682

 Score =  139 bits (350), Expect = 2e-31
 Identities = 65/107 (60%), Positives = 84/107 (78%)
 Frame = -1

Query: 322 VICSCSEQGDPHLAKSLVGSLDWRKVNLNFFVKTALLDMYAKCGDITTAVQIFEEMGTHR 143
           V+ SCS  GDP LA+S+V  LD      N+FVKTALLDM+AKCG++  A +IFE++G ++
Sbjct: 270 VLSSCSSLGDPCLAESIVRKLDRMNFRSNYFVKTALLDMHAKCGNLEVAQKIFEQLGVYK 329

Query: 142 TTVSWNAMISAYTRMGGLESARKLFDEMPEKNAVSWNSMIAGYSQNG 2
            +V+WNAMISAY R+G L  AR LF++MPE+N VSWNSMIAGY+QNG
Sbjct: 330 NSVTWNAMISAYARVGDLSLARDLFNKMPERNTVSWNSMIAGYAQNG 376



 Score = 70.1 bits (170), Expect = 2e-10
 Identities = 29/73 (39%), Positives = 49/73 (67%), Gaps = 1/73 (1%)
 Frame = -1

Query: 217 LLDMYAKCGDITTAVQIFEEMG-THRTTVSWNAMISAYTRMGGLESARKLFDEMPEKNAV 41
           ++  Y KCG+   A ++F  MG + +  ++W  M++ + +M  LE+AR  FDEMPE+   
Sbjct: 171 IISGYWKCGNEKEATRLFCMMGESEKNVITWTTMVTGHAKMRNLETARMYFDEMPERRVA 230

Query: 40  SWNSMIAGYSQNG 2
           SWN+M++GY+Q+G
Sbjct: 231 SWNAMLSGYAQSG 243


>ref|XP_002519368.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223541435|gb|EEF42985.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 524

 Score =  139 bits (350), Expect = 2e-31
 Identities = 68/107 (63%), Positives = 84/107 (78%)
 Frame = -1

Query: 322 VICSCSEQGDPHLAKSLVGSLDWRKVNLNFFVKTALLDMYAKCGDITTAVQIFEEMGTHR 143
           VI SCS  GDP  A+S V  LD RK+ +N+FVKTALLDM AKCG++  A  IF E+G  R
Sbjct: 193 VISSCSSCGDPCRAESFVKLLDKRKIKMNYFVKTALLDMNAKCGNLEAARGIFNELGVSR 252

Query: 142 TTVSWNAMISAYTRMGGLESARKLFDEMPEKNAVSWNSMIAGYSQNG 2
            + +WNAMISAYTR+G L SAR LFD+MPE++AVSWN+MI+GY+QNG
Sbjct: 253 NSSTWNAMISAYTRVGDLLSARDLFDKMPERDAVSWNTMISGYAQNG 299



 Score = 75.1 bits (183), Expect = 6e-12
 Identities = 33/68 (48%), Positives = 49/68 (72%)
 Frame = -1

Query: 205 YAKCGDITTAVQIFEEMGTHRTTVSWNAMISAYTRMGGLESARKLFDEMPEKNAVSWNSM 26
           Y KCG+ T A  +F  M   R  ++W AM++ ++++  L+SARK FD+MP KN VSWN++
Sbjct: 100 YWKCGNETEACSLFS-MTPERNVITWTAMVTGFSKIKELDSARKYFDDMPVKNIVSWNAI 158

Query: 25  IAGYSQNG 2
           I+GY+QNG
Sbjct: 159 ISGYAQNG 166



 Score = 65.1 bits (157), Expect = 6e-09
 Identities = 29/75 (38%), Positives = 46/75 (61%)
 Frame = -1

Query: 232 FVKTALLDMYAKCGDITTAVQIFEEMGTHRTTVSWNAMISAYTRMGGLESARKLFDEMPE 53
           +++  +LDMYAK   I  A ++F+EM T R+   WN+MI  Y + G    A  LF   PE
Sbjct: 60  YIRNVILDMYAKHSLIENARKLFDEM-TERSLADWNSMICGYWKCGNETEACSLFSMTPE 118

Query: 52  KNAVSWNSMIAGYSQ 8
           +N ++W +M+ G+S+
Sbjct: 119 RNVITWTAMVTGFSK 133