BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00036277
         (358 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002511392.1| pentatricopeptide repeat-containing protein,...   160   8e-38
gb|ADN33897.1| pentatricopeptide (PPR) repeat-containing protein...   157   8e-37
ref|XP_004139961.1| PREDICTED: putative pentatricopeptide repeat...   154   5e-36
ref|XP_002264386.1| PREDICTED: putative pentatricopeptide repeat...   150   1e-34
emb|CAN64813.1| hypothetical protein VITISV_024998 [Vitis vinifera]   150   1e-34

>ref|XP_002511392.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223550507|gb|EEF51994.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 441

 Score =  160 bits (406), Expect = 8e-38
 Identities = 77/119 (64%), Positives = 94/119 (78%)
 Frame = -1

Query: 358 VKPSCVTVLGLLRVFAGVGALNSVKEIHGFSIRNGIDLHLQLSSGLIEVYGRCGCLRNAR 179
           +KP+ +T+L LL    G+ ALN ++EIHG+SIRN ID H QL SGL++ YGRCGCL NA 
Sbjct: 193 LKPNLITLLALLPACVGIAALNLIREIHGYSIRNDIDRHPQLGSGLLDAYGRCGCLINAS 252

Query: 178 CVFERMDERDVVAWSSMVSAYALHGEAESALSIFREMELRRVRPDGIAFLGALKACSHA 2
            VF  M ERDVVAWSS++SAYALHGEA++AL IFR+MEL +V+PD I FL  LKACSHA
Sbjct: 253 NVFCGMKERDVVAWSSLISAYALHGEAKNALEIFRQMELAKVQPDDITFLAVLKACSHA 311



 Score = 57.4 bits (137), Expect = 1e-06
 Identities = 23/73 (31%), Positives = 45/73 (61%)
 Frame = -1

Query: 280 IHGFSIRNGIDLHLQLSSGLIEVYGRCGCLRNARCVFERMDERDVVAWSSMVSAYALHGE 101
           +H   ++ G   +  ++S L+++YG+C C+ +AR +F+ + +R+VV W++M+S Y     
Sbjct: 85  VHAHIVKMGFLSNPFVASALVDMYGKCACIFSARKLFDEIPQRNVVVWNAMISLYTHSNR 144

Query: 100 AESALSIFREMEL 62
              AL +F  ME+
Sbjct: 145 VRDALDMFDAMEI 157


>gb|ADN33897.1| pentatricopeptide (PPR) repeat-containing protein [Cucumis melo
           subsp. melo]
          Length = 391

 Score =  157 bits (397), Expect = 8e-37
 Identities = 73/118 (61%), Positives = 95/118 (80%)
 Frame = -1

Query: 358 VKPSCVTVLGLLRVFAGVGALNSVKEIHGFSIRNGIDLHLQLSSGLIEVYGRCGCLRNAR 179
           +KP+ +T+L LL    GV +L+ +K+IHGF++RN I  HLQLSSGL+E YGRCGCL  A 
Sbjct: 140 LKPNLITLLALLPASVGVASLDLIKQIHGFAMRNDIGGHLQLSSGLVEAYGRCGCLSYAH 199

Query: 178 CVFERMDERDVVAWSSMVSAYALHGEAESALSIFREMELRRVRPDGIAFLGALKACSH 5
            VF+ M ERDVVAWSS++SA+ALHGEA +AL+IF++MEL +V+PD I F+G LKACSH
Sbjct: 200 NVFDNMTERDVVAWSSLISAHALHGEASTALNIFQQMELSKVQPDAITFIGVLKACSH 257


>ref|XP_004139961.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g03510-like [Cucumis sativus]
          Length = 391

 Score =  154 bits (390), Expect = 5e-36
 Identities = 72/118 (61%), Positives = 94/118 (79%)
 Frame = -1

Query: 358 VKPSCVTVLGLLRVFAGVGALNSVKEIHGFSIRNGIDLHLQLSSGLIEVYGRCGCLRNAR 179
           +KP+ +T+L LL    GV +L+ +K+IHGF++RN I  HLQLSSGL+E YGRCGCL  A 
Sbjct: 140 LKPNLITLLALLPASVGVASLDLIKQIHGFAMRNDIGAHLQLSSGLVEAYGRCGCLSYAH 199

Query: 178 CVFERMDERDVVAWSSMVSAYALHGEAESALSIFREMELRRVRPDGIAFLGALKACSH 5
            VF+ M ERDVVAWSS++SA+ALHGEA +AL+IF++ME  +V+PD I F+G LKACSH
Sbjct: 200 NVFDNMTERDVVAWSSLISAHALHGEASTALNIFQQMESCKVQPDEITFIGVLKACSH 257


>ref|XP_002264386.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g03510 [Vitis vinifera] gi|298205226|emb|CBI17285.3|
           unnamed protein product [Vitis vinifera]
          Length = 430

 Score =  150 bits (379), Expect = 1e-34
 Identities = 71/121 (58%), Positives = 92/121 (76%), Gaps = 2/121 (1%)
 Frame = -1

Query: 358 VKPSCVTVLGLLRVFAGVGALNSVKEIHGFSIRNGIDLHLQLSSGLIEVYGRCGCLRNAR 179
           +K + +T+L LL     + AL  +KEIHG++IRNGID H  L S L+E YGRCGC+ N++
Sbjct: 177 LKQNLITLLALLPACVDLAALTLIKEIHGYAIRNGIDPHPHLRSCLVEAYGRCGCIVNSQ 236

Query: 178 CVFER--MDERDVVAWSSMVSAYALHGEAESALSIFREMELRRVRPDGIAFLGALKACSH 5
           CVF+   M ERDVVAWSS++SAYALHG+A +AL  F +ME+ +V+PDGI FLG LKACSH
Sbjct: 237 CVFQSISMSERDVVAWSSLISAYALHGDARTALETFEQMEMAKVQPDGITFLGVLKACSH 296

Query: 4   A 2
           A
Sbjct: 297 A 297


>emb|CAN64813.1| hypothetical protein VITISV_024998 [Vitis vinifera]
          Length = 513

 Score =  150 bits (379), Expect = 1e-34
 Identities = 71/121 (58%), Positives = 92/121 (76%), Gaps = 2/121 (1%)
 Frame = -1

Query: 358 VKPSCVTVLGLLRVFAGVGALNSVKEIHGFSIRNGIDLHLQLSSGLIEVYGRCGCLRNAR 179
           +K + +T+L LL     + AL  +KEIHG++IRNGID H  L S L+E YGRCGC+ N++
Sbjct: 177 LKQNLITLLALLPACVDLAALTLIKEIHGYAIRNGIDPHPHLRSCLVEAYGRCGCIVNSQ 236

Query: 178 CVFER--MDERDVVAWSSMVSAYALHGEAESALSIFREMELRRVRPDGIAFLGALKACSH 5
           CVF+   M ERDVVAWSS++SAYALHG+A +AL  F +ME+ +V+PDGI FLG LKACSH
Sbjct: 237 CVFQSISMSERDVVAWSSLISAYALHGDARTALETFEQMEMAKVQPDGITFLGVLKACSH 296

Query: 4   A 2
           A
Sbjct: 297 A 297