BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00036250
         (337 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002274521.1| PREDICTED: DNA-directed RNA polymerase 3, ch...    60   2e-07
emb|CAN65186.1| hypothetical protein VITISV_023905 [Vitis vinifera]    60   2e-07
ref|XP_004162698.1| PREDICTED: DNA-directed RNA polymerase 3, ch...    59   3e-07
ref|XP_004144791.1| PREDICTED: DNA-directed RNA polymerase 3, ch...    59   3e-07
ref|XP_002325119.1| predicted protein [Populus trichocarpa] gi|2...    56   3e-06

>ref|XP_002274521.1| PREDICTED: DNA-directed RNA polymerase 3, chloroplastic [Vitis
           vinifera]
          Length = 979

 Score = 59.7 bits (143), Expect = 2e-07
 Identities = 45/138 (32%), Positives = 57/138 (41%), Gaps = 36/138 (26%)
 Frame = +1

Query: 31  FTLSPLPHPHKWLRGQPQIPKNSL-------NFKXXXXXXXXXXXSFQIPILPQ------ 171
           FT +P PH H        I KNSL       NF               +P+ P       
Sbjct: 34  FTSNPSPHFHT-----STISKNSLSSSSFRHNFHSPSHSSNSEAQCHALPLSPTNNSIET 88

Query: 172 -------------PIFLEEEPPWIASFLSYT----------NDKKKNQEMDKRKYNALRR 282
                        P    ++PPWI+SFL +           N K + +E ++R Y  LRR
Sbjct: 89  LQDSSNIQVKESIPRIFVQDPPWISSFLFHDWCERNRRTGQNVKLEFRETERRNYGLLRR 148

Query: 283 RQVKIETEAWEKTAEEYR 336
           RQVK ETEAWE+  EEYR
Sbjct: 149 RQVKAETEAWERMVEEYR 166


>emb|CAN65186.1| hypothetical protein VITISV_023905 [Vitis vinifera]
          Length = 1312

 Score = 59.7 bits (143), Expect = 2e-07
 Identities = 45/138 (32%), Positives = 57/138 (41%), Gaps = 36/138 (26%)
 Frame = +1

Query: 31  FTLSPLPHPHKWLRGQPQIPKNSL-------NFKXXXXXXXXXXXSFQIPILPQ------ 171
           FT +P PH H        I KNSL       NF               +P+ P       
Sbjct: 34  FTSNPSPHFHT-----STISKNSLSSSSFRHNFHSPSHSSNSEAQCHALPLSPTNNSIET 88

Query: 172 -------------PIFLEEEPPWIASFLSYT----------NDKKKNQEMDKRKYNALRR 282
                        P    ++PPWI+SFL +           N K + +E ++R Y  LRR
Sbjct: 89  LQDSSNIQVKESIPRIFVQDPPWISSFLFHDWCERNRRTGQNVKLEFRETERRNYGLLRR 148

Query: 283 RQVKIETEAWEKTAEEYR 336
           RQVK ETEAWE+  EEYR
Sbjct: 149 RQVKAETEAWERMVEEYR 166


>ref|XP_004162698.1| PREDICTED: DNA-directed RNA polymerase 3, chloroplastic-like
           [Cucumis sativus]
          Length = 975

 Score = 59.3 bits (142), Expect = 3e-07
 Identities = 31/57 (54%), Positives = 38/57 (66%), Gaps = 7/57 (12%)
 Frame = +1

Query: 187 EEPPWIAS-FLS------YTNDKKKNQEMDKRKYNALRRRQVKIETEAWEKTAEEYR 336
           ++PPWIAS FL           K +  E++KRKYN LRRRQ+K ETEAWEK  EEY+
Sbjct: 107 QDPPWIASLFLKGLYKCVQKEVKLEFMEIEKRKYNLLRRRQIKAETEAWEKMVEEYK 163


>ref|XP_004144791.1| PREDICTED: DNA-directed RNA polymerase 3, chloroplastic-like
           [Cucumis sativus]
          Length = 975

 Score = 59.3 bits (142), Expect = 3e-07
 Identities = 31/57 (54%), Positives = 38/57 (66%), Gaps = 7/57 (12%)
 Frame = +1

Query: 187 EEPPWIAS-FLS------YTNDKKKNQEMDKRKYNALRRRQVKIETEAWEKTAEEYR 336
           ++PPWIAS FL           K +  E++KRKYN LRRRQ+K ETEAWEK  EEY+
Sbjct: 107 QDPPWIASLFLKGLYKCVQKEVKLEFMEIEKRKYNLLRRRQIKAETEAWEKMVEEYK 163


>ref|XP_002325119.1| predicted protein [Populus trichocarpa] gi|222866553|gb|EEF03684.1|
           predicted protein [Populus trichocarpa]
          Length = 882

 Score = 56.2 bits (134), Expect = 3e-06
 Identities = 26/57 (45%), Positives = 40/57 (70%), Gaps = 7/57 (12%)
 Frame = +1

Query: 187 EEPPWIASF-------LSYTNDKKKNQEMDKRKYNALRRRQVKIETEAWEKTAEEYR 336
           ++PPWI++        L+    K + ++++KRKYN LRRRQ++ ETEAWE+ A+EYR
Sbjct: 12  QDPPWISAHFWKGMYKLANKKVKVEFKDIEKRKYNLLRRRQIREETEAWERMADEYR 68