BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00036247
         (295 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004144616.1| PREDICTED: pentatricopeptide repeat-containi...    60   2e-07
ref|NP_188050.1| pentatricopeptide repeat-containing protein [Ar...    56   3e-06
dbj|BAB01039.1| unnamed protein product [Arabidopsis thaliana]         56   3e-06
ref|XP_002275546.2| PREDICTED: pentatricopeptide repeat-containi...    55   5e-06
ref|XP_002885037.1| pentatricopeptide repeat-containing protein ...    55   5e-06

>ref|XP_004144616.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
           gi|449511814|ref|XP_004164061.1| PREDICTED:
           pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 681

 Score = 59.7 bits (143), Expect = 2e-07
 Identities = 30/72 (41%), Positives = 44/72 (61%)
 Frame = +2

Query: 5   LYVEMVCADVEPSSFVLSCALKACVGISGLKEGKEIHGQAIKVGYGLSDDSVVDILAKLY 184
           L+ +++C D  P SF L C LK C  +  L+EGK+IHG  +K+G+G+ D  V+  L  +Y
Sbjct: 102 LFCKLLC-DFVPDSFTLPCVLKGCARLGALQEGKQIHGLVLKIGFGV-DKFVLSSLVSMY 159

Query: 185 SVCRLPEEVQKV 220
           S C   E  +KV
Sbjct: 160 SKCGEIELCRKV 171


>ref|NP_188050.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|218546762|sp|Q9LUL5.2|PP229_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At3g14330 gi|332641981|gb|AEE75502.1| pentatricopeptide
           repeat-containing protein [Arabidopsis thaliana]
          Length = 710

 Score = 56.2 bits (134), Expect = 3e-06
 Identities = 29/72 (40%), Positives = 46/72 (63%)
 Frame = +2

Query: 5   LYVEMVCADVEPSSFVLSCALKACVGISGLKEGKEIHGQAIKVGYGLSDDSVVDILAKLY 184
           +YV+M+C+ +EP +F +S ALKACV +  L+ G+ IH Q +K    + D  V ++L KLY
Sbjct: 223 VYVDMLCSFIEPGNFSISVALKACVDLKDLRVGRGIHAQIVKRKEKV-DQVVYNVLLKLY 281

Query: 185 SVCRLPEEVQKV 220
               L ++ +KV
Sbjct: 282 MESGLFDDARKV 293


>dbj|BAB01039.1| unnamed protein product [Arabidopsis thaliana]
          Length = 717

 Score = 56.2 bits (134), Expect = 3e-06
 Identities = 29/72 (40%), Positives = 46/72 (63%)
 Frame = +2

Query: 5   LYVEMVCADVEPSSFVLSCALKACVGISGLKEGKEIHGQAIKVGYGLSDDSVVDILAKLY 184
           +YV+M+C+ +EP +F +S ALKACV +  L+ G+ IH Q +K    + D  V ++L KLY
Sbjct: 230 VYVDMLCSFIEPGNFSISVALKACVDLKDLRVGRGIHAQIVKRKEKV-DQVVYNVLLKLY 288

Query: 185 SVCRLPEEVQKV 220
               L ++ +KV
Sbjct: 289 MESGLFDDARKV 300


>ref|XP_002275546.2| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Vitis vinifera]
          Length = 896

 Score = 55.5 bits (132), Expect = 5e-06
 Identities = 27/71 (38%), Positives = 38/71 (53%)
 Frame = +2

Query: 8   YVEMVCADVEPSSFVLSCALKACVGISGLKEGKEIHGQAIKVGYGLSDDSVVDILAKLYS 187
           Y+EM  +   P +F     LKA  G+  LK G++IH  A+K GYG S  +V + L  +Y 
Sbjct: 80  YIEMTVSGARPDNFAFPAVLKAVSGLQDLKTGEQIHAAAVKFGYGSSSVTVANTLVNMYG 139

Query: 188 VCRLPEEVQKV 220
            C    +V KV
Sbjct: 140 KCGGIGDVCKV 150


>ref|XP_002885037.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata] gi|297330877|gb|EFH61296.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           lyrata subsp. lyrata]
          Length = 690

 Score = 55.5 bits (132), Expect = 5e-06
 Identities = 27/60 (45%), Positives = 41/60 (68%)
 Frame = +2

Query: 5   LYVEMVCADVEPSSFVLSCALKACVGISGLKEGKEIHGQAIKVGYGLSDDSVVDILAKLY 184
           +YV+M+C+ +EP +F +S ALKACV +  L+ G+ IHGQ +K    + D  V ++L KLY
Sbjct: 216 VYVDMLCSFIEPGNFSISVALKACVDLKDLRVGRGIHGQIVKRKEKV-DQVVYNVLLKLY 274