BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00036245
         (594 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002270940.2| PREDICTED: pentatricopeptide repeat-containi...   151   7e-49
ref|XP_002274432.1| PREDICTED: pentatricopeptide repeat-containi...   139   2e-48
gb|ADE76509.1| unknown [Picea sitchensis]                             141   7e-47
emb|CBI41082.3| unnamed protein product [Vitis vinifera]              151   2e-46
ref|XP_003520419.1| PREDICTED: pentatricopeptide repeat-containi...   137   2e-46

>ref|XP_002270940.2| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
           [Vitis vinifera]
          Length = 640

 Score =  151 bits (382), Expect(2) = 7e-49
 Identities = 71/107 (66%), Positives = 83/107 (77%)
 Frame = +2

Query: 173 LRELDEIVTRLKTEGYAPCTSSALHDVDMDEKEQALLHHSEKLAVAFGLISTDHKTPIRI 352
           LR L EI  RLK  GYAP T+S L D D  EKE AL HHSEKLA+AFGL+ST   + IRI
Sbjct: 534 LRMLSEITARLKANGYAPLTASVLQDFDEKEKENALAHHSEKLAIAFGLLSTAPGSTIRI 593

Query: 353 VKNLRVCDDCHLFLKMISKYYNRQMIVRDCNRFHHFRDGSCSCSDFW 493
           VKNLRVCDDCH+ +K+IS+ Y R++IVRD NRFHHF +GSCSC D+W
Sbjct: 594 VKNLRVCDDCHIAIKLISRTYKRRIIVRDRNRFHHFVNGSCSCKDYW 640



 Score = 68.2 bits (165), Expect(2) = 7e-49
 Identities = 32/57 (56%), Positives = 41/57 (71%)
 Frame = +3

Query: 3   LSNIYSKAGRWDEAANLRRKMKEKGVVKKPGCSSIAVNNVVNEFFAGDRAHSRSKEI 173
           LSNIYS+A  WD+  N+RR MK   + K PG SSI V+N V+EF AGD++H  SK+I
Sbjct: 477 LSNIYSQAKEWDKVVNVRRMMKNINIQKVPGSSSIEVDNAVHEFVAGDQSHPESKKI 533


>ref|XP_002274432.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 738

 Score =  139 bits (351), Expect(2) = 2e-48
 Identities = 65/104 (62%), Positives = 81/104 (77%)
 Frame = +2

Query: 182 LDEIVTRLKTEGYAPCTSSALHDVDMDEKEQALLHHSEKLAVAFGLISTDHKTPIRIVKN 361
           LDEI   L+  G+ P TS  L+D+D + KE +L HHSEKLA+AFGLIST  +T IRIVKN
Sbjct: 635 LDEIDQLLEKAGHVPDTSEVLYDMDEEWKEGSLSHHSEKLAIAFGLISTKPETTIRIVKN 694

Query: 362 LRVCDDCHLFLKMISKYYNRQMIVRDCNRFHHFRDGSCSCSDFW 493
           LRVC +CH  +K+ISK +NR++I RD NRFHHF+DGSCSC D+W
Sbjct: 695 LRVCGNCHSAIKLISKIFNREIIARDRNRFHHFKDGSCSCMDYW 738



 Score = 78.6 bits (192), Expect(2) = 2e-48
 Identities = 33/59 (55%), Positives = 47/59 (79%)
 Frame = +3

Query: 3   LSNIYSKAGRWDEAANLRRKMKEKGVVKKPGCSSIAVNNVVNEFFAGDRAHSRSKEIYE 179
           LSNIY+ AGRWD+ A +R K+ +KG+ K PGCSSI V++VV+EF  GD+ H +S++IY+
Sbjct: 575 LSNIYATAGRWDDVARIRTKLNDKGMKKVPGCSSIEVDSVVHEFLVGDKVHEQSQDIYK 633


>gb|ADE76509.1| unknown [Picea sitchensis]
          Length = 246

 Score =  141 bits (356), Expect(2) = 7e-47
 Identities = 61/104 (58%), Positives = 79/104 (75%)
 Frame = +2

Query: 182 LDEIVTRLKTEGYAPCTSSALHDVDMDEKEQALLHHSEKLAVAFGLISTDHKTPIRIVKN 361
           L+E+  +++  GY P T+  LHDV+M++KE +L HHSEKLA+AFGLIST    P+RI+KN
Sbjct: 143 LEELARQMEAAGYVPDTNFVLHDVEMEQKEHSLYHHSEKLAIAFGLISTLPGLPVRIIKN 202

Query: 362 LRVCDDCHLFLKMISKYYNRQMIVRDCNRFHHFRDGSCSCSDFW 493
           LRVC DCH   K ISK   R++I+RD NRFHHF+DG CSC D+W
Sbjct: 203 LRVCGDCHTATKFISKIVEREIIIRDANRFHHFKDGLCSCGDYW 246



 Score = 71.6 bits (174), Expect(2) = 7e-47
 Identities = 31/60 (51%), Positives = 45/60 (75%)
 Frame = +3

Query: 3   LSNIYSKAGRWDEAANLRRKMKEKGVVKKPGCSSIAVNNVVNEFFAGDRAHSRSKEIYES 182
           LSNIY+ AGRWD+ A +R+ MK++GV K+PGCS I V N V+ F   D++H +++EIY +
Sbjct: 83  LSNIYAAAGRWDDVAKVRKIMKDRGVQKQPGCSWIEVKNKVHTFMVEDKSHPQTEEIYST 142


>emb|CBI41082.3| unnamed protein product [Vitis vinifera]
          Length = 413

 Score =  151 bits (382), Expect(2) = 2e-46
 Identities = 71/107 (66%), Positives = 83/107 (77%)
 Frame = +2

Query: 173 LRELDEIVTRLKTEGYAPCTSSALHDVDMDEKEQALLHHSEKLAVAFGLISTDHKTPIRI 352
           LR L EI  RLK  GYAP T+S L D D  EKE AL HHSEKLA+AFGL+ST   + IRI
Sbjct: 307 LRMLSEITARLKANGYAPLTASVLQDFDEKEKENALAHHSEKLAIAFGLLSTAPGSTIRI 366

Query: 353 VKNLRVCDDCHLFLKMISKYYNRQMIVRDCNRFHHFRDGSCSCSDFW 493
           VKNLRVCDDCH+ +K+IS+ Y R++IVRD NRFHHF +GSCSC D+W
Sbjct: 367 VKNLRVCDDCHIAIKLISRTYKRRIIVRDRNRFHHFVNGSCSCKDYW 413



 Score = 60.1 bits (144), Expect(2) = 2e-46
 Identities = 30/63 (47%), Positives = 41/63 (65%), Gaps = 6/63 (9%)
 Frame = +3

Query: 3   LSNIYSKAG------RWDEAANLRRKMKEKGVVKKPGCSSIAVNNVVNEFFAGDRAHSRS 164
           L ++Y+K G      RWD+  N+RR MK   + K PG SSI V+N V+EF AGD++H  S
Sbjct: 244 LVDMYAKCGDIDNSLRWDKVVNVRRMMKNINIQKVPGSSSIEVDNAVHEFVAGDQSHPES 303

Query: 165 KEI 173
           K+I
Sbjct: 304 KKI 306


>ref|XP_003520419.1| PREDICTED: pentatricopeptide repeat-containing protein At1g11290-like
            [Glycine max]
          Length = 801

 Score =  137 bits (346), Expect(2) = 2e-46
 Identities = 62/104 (59%), Positives = 80/104 (76%)
 Frame = +2

Query: 182  LDEIVTRLKTEGYAPCTSSALHDVDMDEKEQALLHHSEKLAVAFGLISTDHKTPIRIVKN 361
            +DE+  +L+  GY P  S  LH++D ++K  AL +HSEKLA+A+GLIST    PIRIVKN
Sbjct: 698  IDEMREKLEDAGYTPDVSCVLHNIDKEKKVSALNYHSEKLAMAYGLISTAPGVPIRIVKN 757

Query: 362  LRVCDDCHLFLKMISKYYNRQMIVRDCNRFHHFRDGSCSCSDFW 493
            LRVCDDCH   K++SK Y R++IVRD NRFHHF++GSCSC D+W
Sbjct: 758  LRVCDDCHNATKLLSKIYGREIIVRDRNRFHHFKEGSCSCCDYW 801



 Score = 73.6 bits (179), Expect(2) = 2e-46
 Identities = 31/59 (52%), Positives = 45/59 (76%)
 Frame = +3

Query: 3   LSNIYSKAGRWDEAANLRRKMKEKGVVKKPGCSSIAVNNVVNEFFAGDRAHSRSKEIYE 179
           +SNIY+ A RW + A +RR MK++G+VK+PG SSI VN +++EF  GDR H  +K++YE
Sbjct: 638 MSNIYASANRWGDVAYIRRAMKDEGIVKEPGVSSIEVNGLLHEFIMGDREHPDAKKVYE 696