BLASTX nr result
ID: Coptis23_contig00036165
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis23_contig00036165
(559 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|ADP20179.1| gag-pol polyprotein [Silene latifolia] 167 7e-63
emb|CAN79321.1| hypothetical protein VITISV_018984 [Vitis vinifera] 163 1e-60
emb|CAN64427.1| hypothetical protein VITISV_029384 [Vitis vinifera] 160 7e-60
gb|ADP20178.1| gag-pol polyprotein [Silene latifolia] 167 9e-60
gb|ABD63193.1| gag-pol polyprotein, putative [Asparagus officina... 161 4e-58
>gb|ADP20179.1| gag-pol polyprotein [Silene latifolia]
Length = 1475
Score = 167 bits (423), Expect(2) = 7e-63
Identities = 77/114 (67%), Positives = 93/114 (81%)
Frame = +3
Query: 216 KAPILALPDFNKVFEVDCDAANVGIVAVFGQEGKPIAYLSKKLNNSSSRYSTYDKEFYAI 395
++PIL LP+FNK+FEV+CDA+ +GI AV QE KPIAY S+KL+ + YSTYDKEFYAI
Sbjct: 886 ESPILTLPNFNKLFEVECDASGIGIGAVLVQEHKPIAYFSEKLSGAKLNYSTYDKEFYAI 945
Query: 396 VRVLGHWRHYLISKEFLLYSDHEALKYINGQHKLNTQHAKWVEFLQSYTFHIKH 557
VR L HW HYL + F+L+SDHEALKYINGQHKLN +HAKWVEFLQS+ F K+
Sbjct: 946 VRALNHWSHYLKPRPFVLHSDHEALKYINGQHKLNHRHAKWVEFLQSFNFSSKY 999
Score = 99.0 bits (245), Expect(2) = 7e-63
Identities = 44/71 (61%), Positives = 55/71 (77%)
Frame = +1
Query: 1 MDPSKVEVILSWPTPKPLHDIRSFHGLAPFYRRFIKGFSSIIAPLTECMKGGVFKWNGDA 180
+D KV+ I SWP PK + D+RSFHGLA FYRRFIK FS+++AP+TECMK G FKW A
Sbjct: 814 VDQEKVKAIKSWPIPKNITDVRSFHGLASFYRRFIKDFSTLMAPITECMKKGEFKWGDKA 873
Query: 181 ENSFELIKMKI 213
E+SF +IK K+
Sbjct: 874 ESSFNIIKEKL 884
>emb|CAN79321.1| hypothetical protein VITISV_018984 [Vitis vinifera]
Length = 1521
Score = 163 bits (412), Expect(2) = 1e-60
Identities = 72/112 (64%), Positives = 91/112 (81%)
Frame = +3
Query: 222 PILALPDFNKVFEVDCDAANVGIVAVFGQEGKPIAYLSKKLNNSSSRYSTYDKEFYAIVR 401
PIL LPDF KVFEV CDA++VGI AV QEG P+A+ S+KLN + +YSTYD EFYA+V+
Sbjct: 907 PILRLPDFEKVFEVACDASHVGIGAVLSQEGHPVAFFSEKLNGAKKKYSTYDLEFYAVVQ 966
Query: 402 VLGHWRHYLISKEFLLYSDHEALKYINGQHKLNTQHAKWVEFLQSYTFHIKH 557
+ HW+HYL KEF+LYSDHEAL+Y+N Q KLN++HAKW FLQ +TF++KH
Sbjct: 967 AIRHWQHYLSYKEFVLYSDHEALRYLNSQKKLNSRHAKWSSFLQLFTFNLKH 1018
Score = 95.5 bits (236), Expect(2) = 1e-60
Identities = 40/70 (57%), Positives = 53/70 (75%)
Frame = +1
Query: 4 DPSKVEVILSWPTPKPLHDIRSFHGLAPFYRRFIKGFSSIIAPLTECMKGGVFKWNGDAE 183
DP K++ I+ WP P +H++RSFHG+A FYRRFI+ FSSI+AP+TECMK G+F W A
Sbjct: 834 DPEKIKAIVDWPVPTNIHEVRSFHGMATFYRRFIRNFSSIMAPITECMKPGLFIWTKAAN 893
Query: 184 NSFELIKMKI 213
+FE IK K+
Sbjct: 894 KAFEEIKSKM 903
>emb|CAN64427.1| hypothetical protein VITISV_029384 [Vitis vinifera]
Length = 1392
Score = 160 bits (406), Expect(2) = 7e-60
Identities = 71/112 (63%), Positives = 90/112 (80%)
Frame = +3
Query: 222 PILALPDFNKVFEVDCDAANVGIVAVFGQEGKPIAYLSKKLNNSSSRYSTYDKEFYAIVR 401
PIL LPDF KVFEV CDA++VGI AV QEG P+A+ S+KLN + +YSTYD EFYA+V+
Sbjct: 832 PILRLPDFEKVFEVACDASHVGIGAVLSQEGHPVAFFSEKLNGAKKKYSTYDLEFYAVVQ 891
Query: 402 VLGHWRHYLISKEFLLYSDHEALKYINGQHKLNTQHAKWVEFLQSYTFHIKH 557
+ HW+HYL KEF+LYSDHEAL+Y+N Q KLN++HAKW FLQ +TF++ H
Sbjct: 892 AIRHWQHYLSYKEFVLYSDHEALRYLNSQKKLNSRHAKWSSFLQLFTFNLXH 943
Score = 95.5 bits (236), Expect(2) = 7e-60
Identities = 40/70 (57%), Positives = 53/70 (75%)
Frame = +1
Query: 4 DPSKVEVILSWPTPKPLHDIRSFHGLAPFYRRFIKGFSSIIAPLTECMKGGVFKWNGDAE 183
DP K++ I+ WP P +H++RSFHG+A FYRRFI+ FSSI+AP+TECMK G+F W A
Sbjct: 759 DPEKIKAIVDWPVPTNIHEVRSFHGMATFYRRFIRNFSSIMAPITECMKPGLFIWTKAAN 818
Query: 184 NSFELIKMKI 213
+FE IK K+
Sbjct: 819 KAFEEIKSKM 828
>gb|ADP20178.1| gag-pol polyprotein [Silene latifolia]
Length = 1518
Score = 167 bits (422), Expect(2) = 9e-60
Identities = 77/112 (68%), Positives = 92/112 (82%)
Frame = +3
Query: 222 PILALPDFNKVFEVDCDAANVGIVAVFGQEGKPIAYLSKKLNNSSSRYSTYDKEFYAIVR 401
PIL LPDF+++FEV+CDA+ VGI AV Q KP+AY S+KLN + +YSTYDKEFYAI+R
Sbjct: 900 PILKLPDFDQLFEVECDASGVGIGAVLIQSQKPVAYFSEKLNGAKLKYSTYDKEFYAIIR 959
Query: 402 VLGHWRHYLISKEFLLYSDHEALKYINGQHKLNTQHAKWVEFLQSYTFHIKH 557
L HW HYL K F+L+SDHEALKYINGQHKLN +HAKWVEFLQS+TF K+
Sbjct: 960 ALMHWNHYLKPKPFVLHSDHEALKYINGQHKLNFRHAKWVEFLQSFTFSSKY 1011
Score = 89.0 bits (219), Expect(2) = 9e-60
Identities = 37/68 (54%), Positives = 50/68 (73%)
Frame = +1
Query: 1 MDPSKVEVILSWPTPKPLHDIRSFHGLAPFYRRFIKGFSSIIAPLTECMKGGVFKWNGDA 180
+D + + SWPTP + ++RSFHGLA FYRRFIK FS+++AP+TECM+ G F+W A
Sbjct: 826 VDQENIAAMQSWPTPTTVTEVRSFHGLASFYRRFIKNFSTVVAPITECMRKGEFQWTEQA 885
Query: 181 ENSFELIK 204
+ SFE IK
Sbjct: 886 QQSFEKIK 893
>gb|ABD63193.1| gag-pol polyprotein, putative [Asparagus officinalis]
Length = 358
Score = 161 bits (407), Expect(2) = 4e-58
Identities = 71/115 (61%), Positives = 90/115 (78%)
Frame = +3
Query: 213 TKAPILALPDFNKVFEVDCDAANVGIVAVFGQEGKPIAYLSKKLNNSSSRYSTYDKEFYA 392
T AP++ LPDF+KVFEV CDA+ +GI V QE PIAY S KL+ + YSTYDKEFYA
Sbjct: 230 TDAPVMRLPDFSKVFEVACDASGIGIGGVLSQEKHPIAYFSAKLSGAKLNYSTYDKEFYA 289
Query: 393 IVRVLGHWRHYLISKEFLLYSDHEALKYINGQHKLNTQHAKWVEFLQSYTFHIKH 557
+V+ L HWRHYL+ +EF++YSDHEAL+Y+N Q KLN + A+WVEFLQ YT+ +KH
Sbjct: 290 VVQSLRHWRHYLLPQEFVIYSDHEALRYLNSQKKLNARRARWVEFLQDYTYTLKH 344
Score = 89.4 bits (220), Expect(2) = 4e-58
Identities = 37/70 (52%), Positives = 53/70 (75%)
Frame = +1
Query: 4 DPSKVEVILSWPTPKPLHDIRSFHGLAPFYRRFIKGFSSIIAPLTECMKGGVFKWNGDAE 183
DP KV+ I+ WP P+ + D+RSFHGLA FYRRFIK FS I+AP+T+C+K F+W+ +A
Sbjct: 160 DPQKVQAIVEWPEPRSIRDVRSFHGLATFYRRFIKEFSVIMAPITDCLKKEEFRWSEEAA 219
Query: 184 NSFELIKMKI 213
+F+ IK ++
Sbjct: 220 TAFKEIKQRM 229