BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00036138
         (315 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003549163.1| PREDICTED: pentatricopeptide repeat-containi...   111   7e-23
ref|XP_002525669.1| pentatricopeptide repeat-containing protein,...   111   7e-23
emb|CBI26396.3| unnamed protein product [Vitis vinifera]              104   6e-21
ref|XP_004137641.1| PREDICTED: pentatricopeptide repeat-containi...    96   2e-18
ref|XP_003574958.1| PREDICTED: pentatricopeptide repeat-containi...    87   1e-15

>ref|XP_003549163.1| PREDICTED: pentatricopeptide repeat-containing protein At4g19191,
           mitochondrial-like [Glycine max]
          Length = 615

 Score =  111 bits (277), Expect = 7e-23
 Identities = 56/109 (51%), Positives = 75/109 (68%), Gaps = 7/109 (6%)
 Frame = +2

Query: 2   WTALIGGYVNIGHVHQAFTLFNQIDQFT--LDSVVFLNFVSGCARIGRLSLA-----LIL 160
           WT +IGGYV IGH  +A+ LF Q+   +  +D VVFLN +SGC ++  L LA     L+L
Sbjct: 220 WTTMIGGYVKIGHAVEAYGLFYQMQHQSVGIDFVVFLNLISGCIQVRDLLLASSVHSLVL 279

Query: 161 KTGCHHHNSVQNSLVNMYPKCGDLVSARRIFHLVKDKSALLWTSLISGY 307
           K GC+  + V+N L+ MY KCG+L SARRIF L+ +KS L WTS+I+GY
Sbjct: 280 KCGCNEKDPVENLLITMYAKCGNLTSARRIFDLIIEKSMLSWTSMIAGY 328



 Score = 82.4 bits (202), Expect = 3e-14
 Identities = 42/110 (38%), Positives = 61/110 (55%), Gaps = 7/110 (6%)
 Frame = +2

Query: 2   WTALIGGYVNIGHVHQAFTLFNQIDQFTL--DSVVFLNFVSGCARIGRLSLA-----LIL 160
           WT++I GYV++GH  +A  LF ++ +  +  +       VS CA +G LS+       I 
Sbjct: 321 WTSMIAGYVHLGHPGEALDLFRRMIRTDIRPNGATLATVVSACADLGSLSIGQEIEEYIF 380

Query: 161 KTGCHHHNSVQNSLVNMYPKCGDLVSARRIFHLVKDKSALLWTSLISGYA 310
             G      VQ SL++MY KCG +V AR +F  V DK   +WTS+I+ YA
Sbjct: 381 LNGLESDQQVQTSLIHMYSKCGSIVKAREVFERVTDKDLTVWTSMINSYA 430


>ref|XP_002525669.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223535105|gb|EEF36787.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 494

 Score =  111 bits (277), Expect = 7e-23
 Identities = 54/108 (50%), Positives = 74/108 (68%), Gaps = 6/108 (5%)
 Frame = +2

Query: 2   WTALIGGYVNIGHVHQAFTLFNQID-QFTLDSVVFLNFVSGCARIGRLSLA-----LILK 163
           WT +IGGYV+ G+V +AF+LFNQ+     LD +VF+  +SGCAR G L LA     L++K
Sbjct: 217 WTTVIGGYVDFGNVREAFSLFNQMRISMRLDFIVFITLISGCAREGNLLLASSVHSLLVK 276

Query: 164 TGCHHHNSVQNSLVNMYPKCGDLVSARRIFHLVKDKSALLWTSLISGY 307
            GC   + + N LV MY KCGDL+SA+R F + ++KS  LWTS+I+ Y
Sbjct: 277 YGCDDKDPIDNLLVTMYSKCGDLISAQRAFDIAREKSLYLWTSMIAAY 324



 Score = 70.5 bits (171), Expect = 1e-10
 Identities = 37/110 (33%), Positives = 58/110 (52%), Gaps = 7/110 (6%)
 Frame = +2

Query: 2   WTALIGGYVNIGHVHQAFTLFNQIDQFTL--DSVVFLNFVSGCARIGRLSLA-----LIL 160
           WT++I  Y ++G+  QA  LFN +    +  +       +S CA +G LS+       IL
Sbjct: 317 WTSMIAAYTHLGYPVQALRLFNTLLGTAIKPNEATLATILSACADLGSLSMGEEIEEYIL 376

Query: 161 KTGCHHHNSVQNSLVNMYPKCGDLVSARRIFHLVKDKSALLWTSLISGYA 310
             G H    VQ SL++M+ +CG L  A+ +F  +  K    W+S+I+GYA
Sbjct: 377 ANGLHSSVQVQTSLIHMFCRCGSLEKAKAVFERLATKDLAAWSSMINGYA 426


>emb|CBI26396.3| unnamed protein product [Vitis vinifera]
          Length = 667

 Score =  104 bits (260), Expect = 6e-21
 Identities = 55/111 (49%), Positives = 73/111 (65%), Gaps = 7/111 (6%)
 Frame = +2

Query: 2   WTALIGGYVNIGHVHQAFTLFNQIDQFTL--DSVVFLNFVSGCARIGRLSLA-----LIL 160
           WT ++GGY++ G V + F +FNQ+    +  DS+VF+N +S C   G L LA     L+L
Sbjct: 194 WTIILGGYLSAGDVAKVFAVFNQMRCQCVGPDSIVFVNLISCCKLSGNLLLAMLVHSLLL 253

Query: 161 KTGCHHHNSVQNSLVNMYPKCGDLVSARRIFHLVKDKSALLWTSLISGYAQ 313
           K+G  H + + N LV MY KC DLVSARR+F  V +KS  LWTS+ISGYAQ
Sbjct: 254 KSGFDHKDPIDNLLVAMYAKCKDLVSARRVFDAVHEKSVFLWTSMISGYAQ 304



 Score = 66.6 bits (161), Expect = 2e-09
 Identities = 35/110 (31%), Positives = 59/110 (53%), Gaps = 7/110 (6%)
 Frame = +2

Query: 2   WTALIGGYVNIGHVHQAFTLFNQI-------DQFTLDSVVFLNFVSGCARIGRLSLALIL 160
           WT++I GY   G+ ++A  LFN +       ++ TL +V+      G  R+G      IL
Sbjct: 295 WTSMISGYAQFGYPNEALHLFNMLLRTASRPNELTLATVLSACAEMGSLRMGEEIEQYIL 354

Query: 161 KTGCHHHNSVQNSLVNMYPKCGDLVSARRIFHLVKDKSALLWTSLISGYA 310
             G      VQ SL++M+ KCG +  A+ +F  + +K   +W+++I+GYA
Sbjct: 355 LNGLGSDLRVQTSLIHMFCKCGSIKKAQALFERIPNKDLAVWSAMINGYA 404



 Score = 54.3 bits (129), Expect = 1e-05
 Identities = 29/105 (27%), Positives = 53/105 (50%), Gaps = 3/105 (2%)
 Frame = +2

Query: 2   WTALIGGYVNIGHVHQAFTLFNQIDQFTLD--SVVFLNFVSGCARIGRLSL-ALILKTGC 172
           W ++I  +    H+ Q+F +  Q+    L+  S  F  F++ C+    LS+   I K G 
Sbjct: 97  WNSIISAHCRDFHIDQSFGILKQMQLLGLELSSATFTGFLASCSLPQGLSIHGYITKLGL 156

Query: 173 HHHNSVQNSLVNMYPKCGDLVSARRIFHLVKDKSALLWTSLISGY 307
             H  + NS+++MY +   +  A  +F+ +  KS + WT ++ GY
Sbjct: 157 DLHLPLANSIMSMYIRLNQIDGALSVFYTLHQKSIVSWTIILGGY 201


>ref|XP_004137641.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g12770-like [Cucumis sativus]
           gi|449514868|ref|XP_004164502.1| PREDICTED:
           pentatricopeptide repeat-containing protein
           At3g12770-like [Cucumis sativus]
          Length = 601

 Score = 96.3 bits (238), Expect = 2e-18
 Identities = 48/110 (43%), Positives = 71/110 (64%), Gaps = 7/110 (6%)
 Frame = +2

Query: 2   WTALIGGYVNIGHVHQAFTLFNQIDQ--FTLDSVVFLNFVSGCARIGRLSL-----ALIL 160
           WT ++GGY+  G V + F  F+Q+ Q    LD  VF++ +S C ++G L L     +L+L
Sbjct: 225 WTIMLGGYLKAGAVAKVFETFSQMRQNNVVLDKFVFVDIISSCIQLGNLFLGSSLHSLLL 284

Query: 161 KTGCHHHNSVQNSLVNMYPKCGDLVSARRIFHLVKDKSALLWTSLISGYA 310
           KTG  + + +   L++MY KCGDL+SAR +F L+ +KS   WTS+ISGYA
Sbjct: 285 KTGLKYEDPIGCLLISMYSKCGDLLSARAVFDLLSEKSIYSWTSMISGYA 334



 Score = 65.1 bits (157), Expect = 6e-09
 Identities = 33/110 (30%), Positives = 60/110 (54%), Gaps = 7/110 (6%)
 Frame = +2

Query: 2   WTALIGGYVNIGHVHQAFTLFNQIDQFTL--DSVVFLNFVSGCARIGRLSL-----ALIL 160
           WT++I GY N G+  +A +LF+   Q  +  +  +    +S CA +G LS+     A I 
Sbjct: 326 WTSMISGYANAGYPREALSLFSMATQNNVRPNGAMLATAISACADLGSLSMRREIEAFIQ 385

Query: 161 KTGCHHHNSVQNSLVNMYPKCGDLVSARRIFHLVKDKSALLWTSLISGYA 310
           + G    + V  SL+++Y K G +  A ++F+ +  +    W+S+++GYA
Sbjct: 386 QDGLASDSQVSTSLIHLYCKFGSIEKAEKVFNSMIHRDLAAWSSMMNGYA 435



 Score = 57.0 bits (136), Expect = 2e-06
 Identities = 34/111 (30%), Positives = 55/111 (49%), Gaps = 9/111 (8%)
 Frame = +2

Query: 2   WTALIGGYVNIGHVHQAFTLFNQI--DQFTLDSVVFLNFVSGCARI-------GRLSLAL 154
           W ++I  Y     V++A  LF ++    F  +S  F++ +SG A         GRL    
Sbjct: 122 WNSMIAAYSRSFRVNEALKLFREMLGGGFEPNSSTFVSLLSGFADPTHGSLFQGRLLHGC 181

Query: 155 ILKTGCHHHNSVQNSLVNMYPKCGDLVSARRIFHLVKDKSALLWTSLISGY 307
           + K   H    V+NSLV MY   G + SA  +F+ + +K+ + WT ++ GY
Sbjct: 182 LTKFQLHDDTPVENSLVQMYVNFGQIDSACSVFYAISEKTVISWTIMLGGY 232


>ref|XP_003574958.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Brachypodium distachyon]
          Length = 598

 Score = 87.0 bits (214), Expect = 1e-15
 Identities = 42/111 (37%), Positives = 67/111 (60%), Gaps = 7/111 (6%)
 Frame = +2

Query: 2   WTALIGGYVNIGHVHQAFTLFNQIDQ--FTLDSVVFLNFVSGCARIGRLSLA-----LIL 160
           W+A++ G++  G   + F LFN +    +  DSV  +N +S    +G L +A     L++
Sbjct: 216 WSAMVSGFLQTGDYMKVFGLFNHMQTAGYKFDSVALVNLISAAVLLGNLLVAKGVHALLI 275

Query: 161 KTGCHHHNSVQNSLVNMYPKCGDLVSARRIFHLVKDKSALLWTSLISGYAQ 313
           K+G      + +SLVN+Y KCGDL +A+ +F  V  K+ +LWTS+ISGYA+
Sbjct: 276 KSGFESEQDLMSSLVNLYAKCGDLEAAQEVFDAVHRKNVVLWTSMISGYAE 326