BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00036069
         (753 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002272339.1| PREDICTED: pentatricopeptide repeat-containi...   190   3e-46
ref|XP_002525572.1| pentatricopeptide repeat-containing protein,...   134   2e-29
ref|XP_004147131.1| PREDICTED: pentatricopeptide repeat-containi...   121   2e-25
ref|XP_002886049.1| pentatricopeptide repeat-containing protein ...   120   2e-25
ref|NP_179518.1| pentatricopeptide repeat-containing protein [Ar...   120   4e-25

>ref|XP_002272339.1| PREDICTED: pentatricopeptide repeat-containing protein At2g19280
           [Vitis vinifera]
          Length = 644

 Score =  190 bits (482), Expect = 3e-46
 Identities = 98/194 (50%), Positives = 130/194 (67%)
 Frame = -1

Query: 585 NSRIQKQSLKRVKSILVKRGWNLDLPNGQMIELDDMNVNQILNDIFYETSNAALAFRFFT 406
           N +     ++ +K IL  RGWNL   NG  I+L   NV +ILND+F E+++AALA  FF 
Sbjct: 26  NEKAVDDEMEIIKVILTNRGWNLGSQNGYRIDLSQFNVMKILNDLFEESTDAALALYFFR 85

Query: 405 WCEQCNGSKNGIRSVCTMIHILLVCGNMNHKVMRLVTDLVAKKDGTEEFDHLIFNVLEET 226
           W E C GSK+ + SVCTMIHIL V GNMNHK M L+  L++   G E + H IF  + ET
Sbjct: 86  WSEYCMGSKHTVESVCTMIHIL-VSGNMNHKAMDLLLHLISYNSGEEGW-HNIFLKIHET 143

Query: 225 HKDIRGLETVYSMLVSKYVGQNLLSMAIELVCRMMMLNIFPASGVCNSLIRKLLESKEME 46
           H   R LETVY MLV+ YV +N+  +A++L+C+M  LNIFP  GVCNSL++ LLES+++ 
Sbjct: 144 HTKRRVLETVYGMLVNCYVKENMTQVALKLICKMRHLNIFPLIGVCNSLLKALLESEQLN 203

Query: 45  LAWGVLDEMHIRGM 4
           LAW  L EM  +G+
Sbjct: 204 LAWDFLKEMKSQGL 217


>ref|XP_002525572.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223535151|gb|EEF36831.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 687

 Score =  134 bits (337), Expect = 2e-29
 Identities = 74/177 (41%), Positives = 112/177 (63%), Gaps = 3/177 (1%)
 Frame = -1

Query: 525 WNLDLPNGQMIELDDMNVNQILNDIFYETSNAALAFRFFTWCEQCNGSKNGIRSVCTMIH 346
           W+L      + +L  ++V  +LND+F E+ NAA A  FF   + C+G ++ IRS+C +IH
Sbjct: 75  WSLGCSTRFITDLSQVSVLGVLNDLFGESFNAAFALYFFRLSQCCSGLEHTIRSLCRLIH 134

Query: 345 ILLVCGNMNHKVMRLVTDLVAKKDGT---EEFDHLIFNVLEETHKDIRGLETVYSMLVSK 175
           IL V G  N++VM L+  LV    G    EE   L+F ++ +T    + LETVYSMLV  
Sbjct: 135 IL-VYGKRNYRVMDLILFLVRNIGGAVGEEELCDLLFKLVYDTGFGTKDLETVYSMLVDC 193

Query: 174 YVGQNLLSMAIELVCRMMMLNIFPASGVCNSLIRKLLESKEMELAWGVLDEMHIRGM 4
           YV ++ +S+A+ L+  + +LNIFP+ GVCNSL++ LL S +++LAW +L+ M   GM
Sbjct: 194 YVTESKVSLALNLIHEIKLLNIFPSMGVCNSLLKALLRSHQLDLAWDILEGMQSFGM 250


>ref|XP_004147131.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g19280-like [Cucumis sativus]
           gi|449503522|ref|XP_004162044.1| PREDICTED:
           pentatricopeptide repeat-containing protein
           At2g19280-like [Cucumis sativus]
          Length = 532

 Score =  121 bits (303), Expect = 2e-25
 Identities = 77/235 (32%), Positives = 129/235 (54%), Gaps = 3/235 (1%)
 Frame = -1

Query: 711 PC-YSYSDNDESETFFTEKHDKSVECDVSGNKERGFFEQKRFVNS--RIQKQSLKRVKSI 541
           PC YS + N E  +F     +     DV+ + ER +   +  V+   +  +  ++ +K I
Sbjct: 21  PCRYSATANSELSSF-NHMDEDCTNYDVNSD-ERSYVGNEVEVSKGQKTDEDEMETIKLI 78

Query: 540 LVKRGWNLDLPNGQMIELDDMNVNQILNDIFYETSNAALAFRFFTWCEQCNGSKNGIRSV 361
           L  RG+NL     Q+       + +IL+ +F ++S+A L   +F W    +GS   + S+
Sbjct: 79  LGNRGFNLGSCPKQL------EIIRILDVLFEDSSDAGLCLYYFKWSGCLSGSNQSLESI 132

Query: 360 CTMIHILLVCGNMNHKVMRLVTDLVAKKDGTEEFDHLIFNVLEETHKDIRGLETVYSMLV 181
           C M HIL V GNMNH+ + L++ LV     TE    ++  V  ETH   + LET  SM+V
Sbjct: 133 CRMAHIL-VAGNMNHRAVDLISHLVKNYGCTEGSSSILLKVFCETHNGRKTLETTCSMMV 191

Query: 180 SKYVGQNLLSMAIELVCRMMMLNIFPASGVCNSLIRKLLESKEMELAWGVLDEMH 16
           + Y+ + +++ A+ L+ +M  LNIFP+  V  S+I+ LL++ +  +AW +L+EMH
Sbjct: 192 NCYIKERMVTSALILIDQMKHLNIFPSIWVYKSVIKALLQTNQSGMAWDLLEEMH 246


>ref|XP_002886049.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata] gi|297331889|gb|EFH62308.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           lyrata subsp. lyrata]
          Length = 755

 Score =  120 bits (302), Expect = 2e-25
 Identities = 70/193 (36%), Positives = 109/193 (56%)
 Frame = -1

Query: 585 NSRIQKQSLKRVKSILVKRGWNLDLPNGQMIELDDMNVNQILNDIFYETSNAALAFRFFT 406
           N  +    ++ ++++L K  W     +G   ELD  NV +IL+D+F ET +A++A  FF 
Sbjct: 142 NIDVPSDCVETIRNVLTKHSWIQKYESGFSTELDQYNVIRILDDLFEETLDASIALYFFR 201

Query: 405 WCEQCNGSKNGIRSVCTMIHILLVCGNMNHKVMRLVTDLVAKKDGTEEFDHLIFNVLEET 226
           W E   G  +  RS+  MIHIL V GNMN++ + ++  LV K  G E    L+   L ET
Sbjct: 202 WSELWIGVAHSSRSISRMIHIL-VSGNMNYRAVDMLLCLVKKCSGKERSLCLVIKDLFET 260

Query: 225 HKDIRGLETVYSMLVSKYVGQNLLSMAIELVCRMMMLNIFPASGVCNSLIRKLLESKEME 46
             D R LETV+ ML+   + +  + MA++L  ++    IFP+ GVC SL+ ++L +  +E
Sbjct: 261 RIDRRVLETVFCMLIDCCIKERKVDMALKLTYKIDQFGIFPSRGVCISLVEEILRAHGLE 320

Query: 45  LAWGVLDEMHIRG 7
           LA   ++ M  RG
Sbjct: 321 LAREFVEHMLSRG 333


>ref|NP_179518.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|334184304|ref|NP_001189552.1| pentatricopeptide
           repeat-containing protein [Arabidopsis thaliana]
           gi|218546774|sp|Q6NKW7.2|PP164_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At2g19280 gi|3135258|gb|AAC16458.1| putative
           salt-inducible protein [Arabidopsis thaliana]
           gi|330251769|gb|AEC06863.1| pentatricopeptide
           repeat-containing protein [Arabidopsis thaliana]
           gi|330251770|gb|AEC06864.1| pentatricopeptide
           repeat-containing protein [Arabidopsis thaliana]
          Length = 693

 Score =  120 bits (300), Expect = 4e-25
 Identities = 69/193 (35%), Positives = 112/193 (58%)
 Frame = -1

Query: 585 NSRIQKQSLKRVKSILVKRGWNLDLPNGQMIELDDMNVNQILNDIFYETSNAALAFRFFT 406
           N  + +  ++ ++++LVK  W     +G   ELD   V +IL+D+F ET +A++   FF 
Sbjct: 75  NIDVPRDCVETIRNVLVKHNWIQKYESGFSTELDQYTVIRILDDLFEETLDASIVLYFFR 134

Query: 405 WCEQCNGSKNGIRSVCTMIHILLVCGNMNHKVMRLVTDLVAKKDGTEEFDHLIFNVLEET 226
           W E   G ++  RS+  MIHIL V GNMN++ + ++  LV K  G E    L+   L ET
Sbjct: 135 WSELWIGVEHSSRSISRMIHIL-VSGNMNYRAVDMLLCLVKKCSGEERSLCLVMKDLFET 193

Query: 225 HKDIRGLETVYSMLVSKYVGQNLLSMAIELVCRMMMLNIFPASGVCNSLIRKLLESKEME 46
             D R LETV+S+L+   + +  ++MA++L  ++    IFP+ GVC SL++++L    +E
Sbjct: 194 RIDRRVLETVFSILIDCCIRERKVNMALKLTYKVDQFGIFPSRGVCISLLKEILRVHGLE 253

Query: 45  LAWGVLDEMHIRG 7
           LA   ++ M  RG
Sbjct: 254 LAREFVEHMLSRG 266