BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00036067
         (354 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003540737.1| PREDICTED: pentatricopeptide repeat-containi...   120   2e-25
ref|XP_002281474.1| PREDICTED: pentatricopeptide repeat-containi...   113   1e-23
emb|CBI16200.3| unnamed protein product [Vitis vinifera]              112   3e-23
ref|NP_172253.1| pentatricopeptide repeat-containing protein [Ar...   112   3e-23
emb|CAN80345.1| hypothetical protein VITISV_003133 [Vitis vinifera]   108   5e-22

>ref|XP_003540737.1| PREDICTED: pentatricopeptide repeat-containing protein At1g07740,
           mitochondrial-like [Glycine max]
          Length = 449

 Score =  120 bits (300), Expect = 2e-25
 Identities = 55/99 (55%), Positives = 68/99 (68%)
 Frame = +1

Query: 4   PNSATYRMVVDGLCAFGEFERGLKVFNAMLTSRHCPRPGTFCCLIKGLCEKGKLSEACFV 183
           PN+ATYRMVVDGLC  G+FE  L V NAMLTSRHCPR  TF C++ GL + G +  +CFV
Sbjct: 348 PNAATYRMVVDGLCQIGDFEVALSVLNAMLTSRHCPRSETFNCMVVGLLKSGNIDGSCFV 407

Query: 184 FEEMGKRNMSFHSEGWEALTGAACGEGRVVSELLTELVT 300
            EEM KR + F  E WE +  +AC E +  SEL+T L +
Sbjct: 408 LEEMEKRKLEFDLESWETIIKSACSENKGASELMTVLTS 446


>ref|XP_002281474.1| PREDICTED: pentatricopeptide repeat-containing protein At1g07740,
           mitochondrial-like [Vitis vinifera]
          Length = 501

 Score =  113 bits (283), Expect = 1e-23
 Identities = 56/100 (56%), Positives = 66/100 (66%)
 Frame = +1

Query: 1   EPNSATYRMVVDGLCAFGEFERGLKVFNAMLTSRHCPRPGTFCCLIKGLCEKGKLSEACF 180
           EPN+ATYRM+VDG C   +FE GLKV +AML   HCPR  +FC L+ GL + GK+  ACF
Sbjct: 399 EPNAATYRMMVDGFCQVEDFEGGLKVLSAMLMCGHCPRLESFCDLVVGLLKNGKIDGACF 458

Query: 181 VFEEMGKRNMSFHSEGWEALTGAACGEGRVVSELLTELVT 300
           V EEM KR M FH E WEAL   AC   R    L+ ELV+
Sbjct: 459 VLEEMEKRKMRFHLEAWEALVKDACPGDRGAGGLVRELVS 498


>emb|CBI16200.3| unnamed protein product [Vitis vinifera]
          Length = 1093

 Score =  112 bits (280), Expect = 3e-23
 Identities = 55/106 (51%), Positives = 67/106 (63%)
 Frame = +1

Query: 1    EPNSATYRMVVDGLCAFGEFERGLKVFNAMLTSRHCPRPGTFCCLIKGLCEKGKLSEACF 180
            EPN+ATYRM+VDG C   +FE GLKV +AML   HCPR  +FC L+ GL + GK+  ACF
Sbjct: 761  EPNAATYRMMVDGFCQVEDFEGGLKVLSAMLMCGHCPRLESFCDLVVGLLKNGKIDGACF 820

Query: 181  VFEEMGKRNMSFHSEGWEALTGAACGEGRVVSELLTELVTTGSSVV 318
            V EEM KR M FH E WEAL   AC   R    L+ EL    + ++
Sbjct: 821  VLEEMEKRKMRFHLEAWEALVKDACPGDRGAGGLVRELKQNTTKII 866


>ref|NP_172253.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|75180186|sp|Q9LQQ1.1|PPR20_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At1g07740, mitochondrial; Flags: Precursor
           gi|8439893|gb|AAF75079.1|AC007583_15 It contains PPR
           repeats PF|01535 [Arabidopsis thaliana]
           gi|14596021|gb|AAK68738.1| Unknown protein [Arabidopsis
           thaliana] gi|31376389|gb|AAP49521.1| At1g07730
           [Arabidopsis thaliana] gi|51970836|dbj|BAD44110.1|
           hypothetical protein [Arabidopsis thaliana]
           gi|332190050|gb|AEE28171.1| pentatricopeptide
           repeat-containing protein [Arabidopsis thaliana]
          Length = 459

 Score =  112 bits (280), Expect = 3e-23
 Identities = 51/101 (50%), Positives = 68/101 (67%), Gaps = 1/101 (0%)
 Frame = +1

Query: 1   EPNSATYRMVVDGLCAFGEFERGLKVFNAMLTSRHCPRPGTFCCLIKGLCEKGKLSEACF 180
           +PN+ATYRM++DG C   +F+ GL V NAML SRHCP P TF C++ GL + G L  ACF
Sbjct: 358 KPNAATYRMMIDGFCRIEDFDSGLNVLNAMLASRHCPTPATFVCMVAGLIKGGNLDHACF 417

Query: 181 VFEEMGKRNMSFHSEGWEALTGAAC-GEGRVVSELLTELVT 300
           V E MGK+N+SF S  W+ L    C  +G V  E L+E+++
Sbjct: 418 VLEVMGKKNLSFGSGAWQNLLSDLCIKDGGVYCEALSEVIS 458


>emb|CAN80345.1| hypothetical protein VITISV_003133 [Vitis vinifera]
          Length = 1051

 Score =  108 bits (270), Expect = 5e-22
 Identities = 51/85 (60%), Positives = 59/85 (69%)
 Frame = +1

Query: 1   EPNSATYRMVVDGLCAFGEFERGLKVFNAMLTSRHCPRPGTFCCLIKGLCEKGKLSEACF 180
           EPN+ATYRM+VDG C   +FE GLKV +AML   HCPR  +FC L+ GL + GK+  ACF
Sbjct: 690 EPNAATYRMMVDGFCQVEDFEGGLKVLSAMLMCGHCPRLESFCDLVVGLLKNGKIDGACF 749

Query: 181 VFEEMGKRNMSFHSEGWEALTGAAC 255
           V EEM KR M FH E WEAL   AC
Sbjct: 750 VLEEMEKRKMRFHLEAWEALVKDAC 774